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0
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358
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Merge CollectInsertSizeMetrics outputs
Picard CollectInsertSizeMetrics
18 months ago by MS ▴ 30
6
votes
4
replies
3.2k
views
CIBERSORT input file for RNA-Seq data
Cibersort RNA-Seq
updated 17 months ago by ★ 4.3k • written 2.5 years ago by ▴ 30
0
votes
0
replies
344
views
determination of miRNA FPKM value
mirdeep2 fpkm cufflinks
2.0 years ago by MS ▴ 30
1
vote
2
replies
737
views
Tumor cell percentage detection tool
cfdna Tumor maftools
updated 10 months ago by 43k • written 2.4 years ago by ▴ 30
0
votes
1
reply
796
views
How to get vafCol converting annovar outputs to maf object
inferHeterogeneity maftools annovarToMaf
updated 2.1 years ago by ▴ 120 • written 2.6 years ago by ▴ 30
0
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3
replies
586
views
Tutorial for ROC curve analysis using DE RNA data in R
ROC
updated 2.1 years ago by 6.2k • written 2.1 years ago by ▴ 30
0
votes
6
replies
1.6k
views
Unsupervised hierarchical clustering of DEG in Rstudio
hclust clustering Unsupervised DEGclustering
updated 2.2 years ago by ★ 16k • written 2.2 years ago by ▴ 30
2
votes
4
replies
1.5k
views
How to merge miRDeep2 counts for DeSeq2 analysis?
DEmiRNA miRDeep2 smallRNA-SEQ
2.4 years ago by MS ▴ 30
0
votes
0
replies
491
views
Immune cell heterogeneity clustering using CIBERSORT output
cell immune hierarchical cibersort clustering heterogeneity Deconvolution
2.4 years ago by MS ▴ 30
1
vote
3
replies
1.5k
views
Header error while converting sam file to bam
errorconvertsamtobam samtools bowtie samtoolsheadererror
updated 2.4 years ago by ▴ 270 • written 2.4 years ago by ▴ 30
0
votes
0
replies
717
views
Comparison of ChIPseeker and GREAT peak annotations
Peak annotation GREAT ChIPseeker
2.5 years ago by MS ▴ 30
7
votes
7
replies
3.6k
views
6 follow
How to get output of annotated genes from ChIPseeker tool
ChIPseeker peakannotation
updated 2.6 years ago by ★ 1.9k • written 3.0 years ago by ▴ 30
0
votes
0
replies
853
views
How to get vaf information column using annovartomaf
inferHeterogeneity vafCol maftools t_vaf annovartomaf
2.6 years ago by MS ▴ 30
2
votes
5
replies
994
views
how to determine genes expressed in NK cells using DE RNA-Seq data
ImmGen NKcellgenes
updated 2.8 years ago by 43k • written 2.8 years ago by ▴ 30
2
votes
13
replies
2.6k
views
pearson correlation between lncRNA and mRNA
pearson correlation R cor.test
updated 2.4 years ago by 43k • written 2.8 years ago by ▴ 30
0
votes
0
replies
785
views
Best Tool for Tumor Cell Percentage Calculation (Paired NGS data)
next-gen snp SNP NGS
4.8 years ago by MS ▴ 30
0
votes
0
replies
1.5k
views
gatk AnalyzeCovariates The following object is masked from package stats
R AnalyzeCovariates stats gatk
5.2 years ago by MS ▴ 30
1
vote
5
replies
1.7k
views
defuse running error message
defuse software error
5.2 years ago by MS ▴ 30
3
votes
1
reply
7.3k
views
conda Solving environment: failed
defuse conda anaconda chimerascan
updated 5.2 years ago by 104k • written 5.2 years ago by ▴ 30
2
votes
4
replies
1.7k
views
why FastQC tool K-mer content parameter is absent?
fastqc wts k-mer afterQC fastp
5.3 years ago by MS ▴ 30
2
votes
2
replies
1.2k
views
Best tool for Chimeric Transcript Analysis?
RNA-Seq WTS Chimeric NGS fusion
updated 5.3 years ago by ★ 1.0k • written 5.3 years ago by ▴ 30
0
votes
8
replies
1.2k
views
AfterQC what is the reason killed
sequence alignment
5.3 years ago by MS ▴ 30
22 results • Page 1 of 1
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