User: esraesmeray1990

Reputation:
10
Status:
New User
Location:
Izmir Biomedicine and Genome Center
Last seen:
4 months, 4 weeks ago
Joined:
2 years, 9 months ago
Email:
e**************@gmail.com

Posts by esraesmeray1990

<prev • 20 results • page 2 of 2 • next >
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Comment: C: why FastQC tool K-mer content parameter is absent?
... I used Version 0.11.8. ...
written 12 months ago by esraesmeray199010
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why FastQC tool K-mer content parameter is absent?
... Hi I used fastqc tool after running Afterqc tool but at the result I saw k-mer content parameter is absent. what could be the reason of it and how should i add k-mer content to analysis? by the way, I run FastQC after Fastp tool for the same data and there was k-mer content. ...
k-mer fastqc fastp wts afterqc written 12 months ago by esraesmeray199010
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Comment: C: Best tool for Chimeric Transcript Analysis?
... These papers are very helpful, thanks a lot. ...
written 12 months ago by esraesmeray199010
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Best tool for Chimeric Transcript Analysis?
... Hi I am searching a good tool for chimeric transcript analysis. (I have WTS) I see most of the people use TopHat2 for this aim but I also found a tool called fusioncatcher which is one of the best tool for me but it requires 24 GB RAM and my laptop has just 8GB RAM. So if you can recommend some too ...
ngs chimeric fusion wts rna-seq written 12 months ago by esraesmeray199010 • updated 12 months ago by guillaume.rbt770
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Comment: C: AfterQC what is the reason killed
... my laptop's RAM is 8 gb also so i think it shouldnt be poblem about RAM ...
written 12 months ago by esraesmeray199010
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Comment: C: AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for f
... I am trying to run afterQC as i saw here it needs only 4 gb RAM. but I am taking memory failed error. (I am using 250 gb SSD and also 1 tb HDD and RAM 8gb) ...
written 12 months ago by esraesmeray199010
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Comment: C: AfterQC what is the reason killed
... No it didnt. I think problem is about memory. but it was okay before I am using 250 gb SSD now, but as i know Afterqc needs just 4 gb? how should i run afterqc? and now i took that output: Traceback (most recent call last): File "/home/esra/anaconda3/pkgs/afterqc-0.9.7-py27_2/bin/aft ...
written 12 months ago by esraesmeray199010
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Comment: C: AfterQC what is the reason killed
... I think its about memory. i tried htop. but it was okay before. I am using 250 gb SSD but as i know Afterqc needs just 4 gb? how should i run afterqc? and now i took that outpıut: Traceback (most recent call last): File "/home/esra/anaconda3/pkgs/afterqc-0.9.7-py27_2/bin/after.py", lin ...
written 12 months ago by esraesmeray199010
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Comment: C: AfterQC what is the reason killed
... thank you, i am new as you can understand :) ...
written 12 months ago by esraesmeray199010
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AfterQC what is the reason killed
... When i run afterQC tool for my WTS raw data suddenly it just wrote killed . there is not any warning etc. what could be the reason? esra@asus:/media/esra/Seagate Expansion Drive/try-1$ pypy /home/esra/AfterQC/after.py -1 R1.fq.gz -2 R_2.fq.gz R1.fq.gz options: {'read1_file': 'R1.fq.gz', ...
sequence alignment written 12 months ago by esraesmeray199010

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