User: scott.hazelhurst

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Posts by scott.hazelhurst

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Comment: C: crlmm problem: NChannelSet error
... It's not my `pd` object -- at least directly. The "pd" object is created inside the clrmm-illumina.R code and so I am hoping that somone who knows the clrmm code can help. I have tried to trace through the code and understand what's happening but not managed. Moreover the Biobase call which creat ...
written 9 months ago by scott.hazelhurst10
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crlmm problem: NChannelSet error
... I am trying to use crlmm to process some idat files. Using genotype.illumina I get the following error. Error in validObject(.Object) : invalid class “NChannelSet” object: sampleNames differ between phenoData and protocolData In addition: Warning messages: 1: Setting row names on ...
crlmm biobase written 9 months ago by scott.hazelhurst10
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crlmm for new chip
... Dear all We would like to use crlmm for a new chip (to be manufactured by Illumina), which is not supported by crlmm. The documentation is a little cryptic, and past postings in this forum have been contradictory whether and how this is possible. If there are any references to documentation on how ...
crlmm new chip written 3.2 years ago by scott.hazelhurst10 • updated 19 months ago by Biostar ♦♦ 20

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