User: EOX123

gravatar for EOX123
EOX12310
Reputation:
10
Status:
New User
Location:
Last seen:
1 year, 2 months ago
Joined:
2 years, 6 months ago
Email:
c*************@keble.ox.ac.uk

Posts by EOX123

<prev • 5 results • page 1 of 1 • next >
1
vote
0
answers
340
views
0
answers
Linking point mutations to expression levels
... I have a library of sequences, each with a different single point mutation and a calculated expression value associated to it. Different point mutations are causing each sequence to have a different expression level. Would anyone have an idea of the best way to determine the relationship between sin ...
sequence rna-seq mutations expression written 14 months ago by EOX12310
0
votes
2
answers
1.1k
views
2
answers
Comment: C: BAM File Export Coverage Values from IGV or using PySam/Samtools
... Thank you for this! I found out that IGVtools command line can do it but this might come to use. ...
written 18 months ago by EOX12310
0
votes
2
answers
1.1k
views
2
answers
Comment: C: BAM File Export Coverage Values from IGV or using PySam/Samtools
... To have a file that gives me at each position the percent reads for each base (ACTGN), insertion, deletions but I just found out that the IGVtools command line does exactly what I want! ...
written 18 months ago by EOX12310
1
vote
2
answers
1.1k
views
7 follow
2
answers
BAM File Export Coverage Values from IGV or using PySam/Samtools
... Would anyone please be able to help me with the following, I am new to sequencing analysis: *Input Data: .bam file with thousands of reads .fasta file with my reference* When I align my .bam file reads to my reference using IGV I get a coverage track displaying the depth of the reads at each locus ...
alignment samtools igv bam sequencing written 18 months ago by EOX12310 • updated 14 months ago by christophersemail400
1
vote
1
answer
725
views
1
answer
Using BioPAX & associated tools
... Hi Everyone! I am currently trying to recreate a gene network using BioPAX in R. I am very new to BioPAX and I would like to know if anyone here could please help me understand a few things: -What is the best way to automatically import BioPAX data for specific pathways from databases (ie. Reactom ...
R java paxtools biopax networks written 2.5 years ago by EOX12310 • updated 2.5 years ago by cannin250

Latest awards to EOX123

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1710 users visited in the last hour