User: umermehar10

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Posts by umermehar10

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Variant calling in galaxy
... I am using galaxy GATKtools for variant callin. At unified genotyper SNP and INDEL caller I am unable to run the advance level of analysis as the options for annotation (Fisher Stand, Haplotype Score Homopolymerrun etc are not available in the list) they were available previously now I am unable to ...
next-gen snp written 10 days ago by umermehar100
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Comment: C: R for Amova Analysis on Diploid Biallelic SNP data.
... It is Poppr package in R. I am trying the stratification of populations and sub populations for running AMOVA test using. I have my file named mosrap21 so running the command > strata(monsrap21) <- data.frame(other(monsrap21)$population_hierarchy) It is giving the Error: Number of rows in da ...
written 5 months ago by umermehar100
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R for Amova Analysis on Diploid Biallelic SNP data.
... I am using Popper program. Unable to Complete data stratification. As I am using data from plant origin without clonal attributes. kindly help in this regard ...
R amova snp written 5 months ago by umermehar100

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