User: niu.shengyong

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Posts by niu.shengyong

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Comment: C: Error of SAMSequenceDictionary
... Do you have any suggestion? Thanks ! ...
written 5 weeks ago by niu.shengyong30
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Comment: C: Error of SAMSequenceDictionary
... Yes. I don't have any duplications in my @SQ lines and got the error ...
written 5 weeks ago by niu.shengyong30
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Comment: C: Error of SAMSequenceDictionary
... Where do you see that? I don't have the same two lines like that actually. Thanks! ...
written 5 weeks ago by niu.shengyong30
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Comment: C: Error of SAMSequenceDictionary
... I don't quite understand what is "extraneous @SQ line"? For example, I have @SQ SN:chr3 LN:198022430 and @SQ SN:chr3 LN:160039680. Should I remove both of them? ...
written 5 weeks ago by niu.shengyong30
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Comment: C: Error of SAMSequenceDictionary
... Do you have any suggestion ? Thanks! ...
written 5 weeks ago by niu.shengyong30
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Comment: C: Error of SAMSequenceDictionary
... Sorry, but I still don't know what to do with the header. do you have any suggestion? For example, I have @SQ SN:chr3 LN:198022430 and @SQ SN:chr3 LN:160039680. What should I do? Thanks! ...
written 5 weeks ago by niu.shengyong30
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Comment: C: Error of SAMSequenceDictionary
... For example, chr1 has @SQ SN:chr1 LN:249250621, @SQ SN:chr1_gl000191_random LN:106433, @SQ SN:chr1_gl000192_random LN:547496, etc. Which should I delete? Thanks! ...
written 6 weeks ago by niu.shengyong30
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Comment: C: Error of SAMSequenceDictionary
... Thanks! In the post, they proposed to delete the duplicate lines on my own. However, I'm not sure which duplicates should I delete? ...
written 6 weeks ago by niu.shengyong30
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Comment: A: Error of SAMSequenceDictionary
... Sorry I need to post the header separately, because the biostars system think it's in German rather than in English... ...
written 6 weeks ago by niu.shengyong30
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Comment: A: Error of SAMSequenceDictionary
... @SQ SN:chrUn_GL456359 LN:22974 @SQ SN:chrUn_GL456360 LN:31704 @SQ SN:chrUn_GL456366 LN:47073 @SQ SN:chrUn_GL456367 LN:42057 @SQ SN:chrUn_GL456368 LN:20208 @SQ SN:chrUn_GL456370 LN:26764 @SQ SN:chrUn_GL456372 LN:28664 @SQ SN:chrUn_GL456378 LN:31602 @SQ SN:chrUn_GL4 ...
written 6 weeks ago by niu.shengyong30

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