User: niu.shengyong

gravatar for niu.shengyong
Reputation:
50
Status:
New User
Location:
Last seen:
2 months ago
Joined:
2 years, 8 months ago
Email:
n************@gmail.com

Posts by niu.shengyong

<prev • 53 results • page 1 of 6 • next >
0
votes
0
answers
145
views
0
answers
Interpret contribution of regions in Partitioning heritability enrichment result
... I'm using LDSC tool for working on partitioned heritability enrichment analysis across different cell types. I'm curious is there any way that I can know what regions of the chromosomes contribute in the enrichment scores most? If not, is there any other tool can work for this purpose? Thanks! ...
ldsc enrichment snp ld written 3 months ago by niu.shengyong50
1
vote
1
answer
255
views
1
answers
Comment: C: MA plot x axis meaning
... Thanks for your explanation! ...
written 4 months ago by niu.shengyong50
3
votes
1
answer
255
views
1
answer
MA plot x axis meaning
... Hi there, I'm new to this analysis area, and I already look into many threads, but still don't understand the meaning of "mean normalized counts" in MA plot. Is it the mean normalized read counts between comparison groups? If so, what's the biological meaning of it, and also with fold change ? Thank ...
rna-seq written 4 months ago by niu.shengyong50 • updated 4 months ago by ATpoint26k
0
votes
0
answers
174
views
0
answers
Comment: C: Analyze normalized illumina microarray data
... Thank you! There are many published microarray data in GEO are in this normalized format. I'm curious how did you guys work on that? Thanks ...
written 4 months ago by niu.shengyong50
0
votes
0
answers
174
views
0
answers
Comment: C: Analyze normalized illumina microarray data
... Thanks for your help. I've looked into the limma manual, but still don't know how to use this as input by limma package. Could you give me a hint where to start from the codes? Thanks! ...
written 4 months ago by niu.shengyong50
0
votes
0
answers
174
views
0
answers
Analyze normalized illumina microarray data
... Hi there, is there any way to use normalized signal density table from illumina microarray to do analysis? My goal is to get differential expressed genes. I've looked into limma, but not sure how to use such processed data. Example: #ID_REF = #VALUE = Normalized signal intensity ID_RE ...
illumina analysis rna microarray written 4 months ago by niu.shengyong50 • updated 3 months ago by Biostar ♦♦ 20
0
votes
1
answer
640
views
1
answers
Comment: C: Error of SAMSequenceDictionary
... Do you have any suggestion? Thanks ! ...
written 19 months ago by niu.shengyong50
0
votes
1
answer
640
views
1
answers
Comment: C: Error of SAMSequenceDictionary
... Yes. I don't have any duplications in my @SQ lines and got the error ...
written 19 months ago by niu.shengyong50
0
votes
1
answer
640
views
1
answers
Comment: C: Error of SAMSequenceDictionary
... Where do you see that? I don't have the same two lines like that actually. Thanks! ...
written 19 months ago by niu.shengyong50
0
votes
1
answer
640
views
1
answers
Comment: C: Error of SAMSequenceDictionary
... I don't quite understand what is "extraneous @SQ line"? For example, I have @SQ SN:chr3 LN:198022430 and @SQ SN:chr3 LN:160039680. Should I remove both of them? ...
written 19 months ago by niu.shengyong50

Latest awards to niu.shengyong

Popular Question 18 months ago, created a question with more than 1,000 views. For RNA-seq power analysis
Popular Question 18 months ago, created a question with more than 1,000 views. For Cummerbund Volcano plot infinite value
Popular Question 18 months ago, created a question with more than 1,000 views. For DeSeq2 MA plot

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 730 users visited in the last hour