User: fabrizio.frasca

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Posts by fabrizio.frasca

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Gene expression values from ENCODE RNA-seq experiments
... Hi there! I am struggling to figure out what could be the more sensible way to retrieve data for gene expression levels from RNA-seq experiments. I am working on a statistical regression model to predict the expression levels for protein coding genes in the K562 cell-line. In order to construct my ...
mrna k562 encode rna-seq written 17 months ago by fabrizio.frasca0
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Choosing the right RNA-seq experiment: polyA mRNA vs polyA depleted
... Hello (: I am relatively new to bioinformatics and I am a Computer Scientist, not a biologist so, I apologize in advance if the question may sound little bit silly. I am working to a model dealing with several kind of data, including gene expression data. For the moment, I am focusing on the cano ...
k562 encode rna-seq sequencing written 23 months ago by fabrizio.frasca0
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macs 1.4 (negative) peaks
... Hi everyone! I am using macs 1.4 to perform peak calling on a gata1 transcription factor ChIP-Seq experiment. It's just a didactic exercise. I got in output both the two files: gata1_peaks.xls and gata1_negative_peaks.xls. I know that negative peaks are called by swapping the treatment with the con ...
macs chip-seq written 23 months ago by fabrizio.frasca0 • updated 18 months ago by Biostar ♦♦ 20

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