User: cynthiamonster

Reputation:
0
Status:
New User
Last seen:
3 years, 1 month ago
Joined:
3 years, 1 month ago
Email:
c*************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by cynthiamonster

<prev • 3 results • page 1 of 1 • next >
0
votes
2
answers
1.7k
views
2
answers
Comment: C: plink vcf recodeA error ALT allele duplicates REF allele
... Thanks. Now I understand why --maf is not working but the --not-chr is effective since it is processed before the --vcf turns the file into binary format. Based on this order of operations it appears that I would not be able to exclude an exact position within a chromosome using --from --to commands ...
written 3.1 years ago by cynthiamonster0
0
votes
2
answers
1.7k
views
2
answers
Comment: C: plink vcf recodeA error ALT allele duplicates REF allele
... Yes, thanks for the code. I was about to go down that path but was hoping there was a more simple way to exclude them from the --out command Note: --maf setting restricting minor allele frequencies to larger values hasn't worked to exclude these either which doesn't fully make sense to me either. ...
written 3.1 years ago by cynthiamonster0
3
votes
2
answers
1.7k
views
2
answers
plink vcf recodeA error ALT allele duplicates REF allele
... I am using plink to to export sequence data in vcf format to a raw file but keep getting the following error at a specific line that halts the entire process: "ALT allele duplicates REF allele on line 166993 of .vcf file" using the following command plink --vcf "infile.vcf.gz" --extract exomeids. ...
plink written 3.1 years ago by cynthiamonster0 • updated 3.1 years ago by Pierre Lindenbaum128k

Latest awards to cynthiamonster

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1112 users visited in the last hour