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How do you interpret Tukey's significance when there is no group clustering alone?
Tukey
3.7 years ago by DNAngel ▴ 250
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2.7k
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Answer: Answer: How do you interpret Tukey's significance when there is no group clustering alon
3.7 years ago by DNAngel ▴ 250
1
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1
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1.8k
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What is the difference between using -max_target_seqs 1 -max_hsps 1 versus just the defaults and then filtering for top hit?
blast
updated 3.7 years ago by 151k • written 3.7 years ago by ▴ 250
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0
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756
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R vegdist does not compute distances for all my sites
vegan vegdist R
updated 3.7 years ago by 45k • written 3.7 years ago by ▴ 250
3
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1
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2.6k
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What is the recommended contig length to filter?
metaspades
updated 3.8 years ago by ★ 29k • written 3.8 years ago by ▴ 250
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1.4k
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Comment: Comment: Is there a different names.dmp file in the taxonomy name/id browser?
3.8 years ago by DNAngel ▴ 250
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2
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1.4k
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Comment: Comment: Is there a different names.dmp file in the taxonomy name/id browser?
3.8 years ago by DNAngel ▴ 250
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1
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1.4k
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Comment: Comment: Is there a different names.dmp file in the taxonomy name/id browser?
3.8 years ago by DNAngel ▴ 250
2
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6
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1.4k
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Is there a different names.dmp file in the taxonomy name/id browser?
ncbi
updated 3.8 years ago by 151k • written 3.8 years ago by ▴ 250
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2.3k
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Comment: Comment: Diamond results non-specific compared to NCBI Web
3.8 years ago by DNAngel ▴ 250
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0
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2.5k
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Comment: Comment: Blast 2.11 not blasting all sequences in a file?
3.8 years ago by DNAngel ▴ 250
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0
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2.5k
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Comment: Comment: Blast 2.11 not blasting all sequences in a file?
3.8 years ago by DNAngel ▴ 250
0
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2
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2.5k
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Comment: Comment: Blast 2.11 not blasting all sequences in a file?
3.8 years ago by DNAngel ▴ 250
1
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11
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2.5k
views
Blast 2.11 not blasting all sequences in a file?
blast
3.8 years ago by DNAngel ▴ 250
0
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1
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2.5k
views
Comment: Comment: Blast 2.11 not blasting all sequences in a file?
3.8 years ago by DNAngel ▴ 250
0
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0
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2.5k
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Comment: Comment: Blast 2.11 not blasting all sequences in a file?
3.8 years ago by DNAngel ▴ 250
0
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1
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2.4k
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Comment: Comment: Why do I lose sequences when converting my bam files into fastq?
3.9 years ago by DNAngel ▴ 250
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0
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2.4k
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Comment: Comment: Why do I lose sequences when converting my bam files into fastq?
3.9 years ago by DNAngel ▴ 250
0
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0
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2.4k
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Comment: Comment: Why do I lose sequences when converting my bam files into fastq?
3.9 years ago by DNAngel ▴ 250
0
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0
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2.4k
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Comment: Comment: Why do I lose sequences when converting my bam files into fastq?
3.9 years ago by DNAngel ▴ 250
0
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0
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2.4k
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Comment: Comment: Why do I lose sequences when converting my bam files into fastq?
3.9 years ago by DNAngel ▴ 250
7
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12
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2.4k
views
7 follow
Why do I lose sequences when converting my bam files into fastq?
fastq bam bamToFastq
updated 3.9 years ago by 14k • written 3.9 years ago by ▴ 250
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0
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825
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Confused about sambamba syntax for unmapped and mapped
sambamba
3.9 years ago by DNAngel ▴ 250
1
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0
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952
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Comment: Comment: Does spades/metaspades normally having missing nodes?
3.9 years ago by DNAngel ▴ 250
2
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2
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952
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Does spades/metaspades normally having missing nodes?
metaspades spades
3.9 years ago by DNAngel ▴ 250
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0
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1.6k
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Comment: Comment: How to use lapply to extract taxonomic information in my species list?
3.9 years ago by DNAngel ▴ 250
0
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0
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755
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Comment: Comment: How to get domain/kingdom name in a table of taxid in R tidyverse?
3.9 years ago by DNAngel ▴ 250
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1
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1.6k
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Comment: Comment: How to use lapply to extract taxonomic information in my species list?
3.9 years ago by DNAngel ▴ 250
0
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1
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1.6k
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Comment: Comment: How to use lapply to extract taxonomic information in my species list?
3.9 years ago by DNAngel ▴ 250
3
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5
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1.6k
views
How to use lapply to extract taxonomic information in my species list?
R
3.9 years ago by DNAngel ▴ 250
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0
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5.0k
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Comment: Comment: How to get full taxonomy classification using taxize and myTAI
3.9 years ago by DNAngel ▴ 250
0
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2
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755
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How to get domain/kingdom name in a table of taxid in R tidyverse?
R
3.9 years ago by DNAngel ▴ 250
0
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1
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4.6k
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Comment: Comment: kraken2 unclassified output does not work with paired reads?
3.9 years ago by DNAngel ▴ 250
4
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3
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4.6k
views
kraken2 unclassified output does not work with paired reads?
Kraken2
updated 3.9 years ago by 102k • written 3.9 years ago by ▴ 250
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0
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4.2k
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Comment: Comment: Bamtools stats and samtools flagstat produce different results and confusing my
3.9 years ago by DNAngel ▴ 250
1
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1
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1.6k
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Best method to visualize metagenomic data besides krona?
metagenomics krona
updated 3.9 years ago by 3.9k • written 3.9 years ago by ▴ 250
0
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1
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4.2k
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Comment: Comment: Bamtools stats and samtools flagstat produce different results and confusing my
3.9 years ago by DNAngel ▴ 250
0
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1
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4.2k
views
Comment: Comment: Bamtools stats and samtools flagstat produce different results and confusing my
4.0 years ago by DNAngel ▴ 250
3
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6
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4.2k
views
Bamtools stats and samtools flagstat produce different results and confusing my sambamba output.
sambamba bamtools samtools
3.9 years ago by DNAngel ▴ 250
0
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0
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4.3k
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Comment: Comment: Why does Kraken2 not produce taxon percentages with --report flag?
4.0 years ago by DNAngel ▴ 250
0
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1
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4.3k
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Comment: Comment: Why does Kraken2 not produce taxon percentages with --report flag?
4.0 years ago by DNAngel ▴ 250
0
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1
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4.3k
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Comment: Comment: Why does Kraken2 not produce taxon percentages with --report flag?
4.0 years ago by DNAngel ▴ 250
0
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0
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4.3k
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Comment: Comment: Why does Kraken2 not produce taxon percentages with --report flag?
4.0 years ago by DNAngel ▴ 250
1
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1
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4.3k
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Answer: Answer: Why does Kraken2 not produce taxon percentages with --report flag?
4.0 years ago by DNAngel ▴ 250
0
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1
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3.5k
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Comment: Comment: What do you do with the data processed after running metaspades/spades?
4.0 years ago by DNAngel ▴ 250
0
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1
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3.5k
views
Comment: Comment: What do you do with the data processed after running metaspades/spades?
4.0 years ago by DNAngel ▴ 250
0
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0
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3.5k
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Comment: Comment: What do you do with the data processed after running metaspades/spades?
4.0 years ago by DNAngel ▴ 250
0
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6
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3.5k
views
What do you do with the data processed after running metaspades/spades?
metaspades spades
updated 4.0 years ago by 3.9k • written 4.0 years ago by ▴ 250
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0
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9.3k
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Comment: C: How do you download the nt database for Kraken2?
4.2 years ago by DNAngel ▴ 250
0
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0
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9.3k
views
Comment: C: How do you download the nt database for Kraken2?
4.2 years ago by DNAngel ▴ 250
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