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0
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676
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How to test evolutionary rates for each species in a gene alignment?
evolutionary rate R
4.7 years ago by DNAngel ▴ 250
0
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0
replies
993
views
R package to calculate ancestral state characters using maximum parsimony?
R maximum parsimony ancestral states
4.9 years ago by DNAngel ▴ 250
0
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2
replies
6.1k
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Is there a tool to calculate sequence similarity of sequences in a MSA?
alignment DNA
4.9 years ago by DNAngel ▴ 250
0
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0
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977
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Theory question on dN/dS values for phylogeny
dNdS paml codeml
5.0 years ago by DNAngel ▴ 250
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1
reply
2.8k
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Comment: C: Help with understanding PAML M0 output
5.0 years ago by DNAngel ▴ 250
0
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1
reply
2.8k
views
Comment: C: Help with understanding PAML M0 output
5.0 years ago by DNAngel ▴ 250
0
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1
reply
2.8k
views
Comment: C: Help with understanding PAML M0 output
5.0 years ago by DNAngel ▴ 250
1
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7
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2.8k
views
Help with understanding PAML M0 output
PAML M0
updated 5.0 years ago by ★ 1.7k • written 5.0 years ago by ▴ 250
5
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4
replies
2.7k
views
Does Whole Exome Sequencing Include Mitochondrial Genome??
mitogenome exome whole exome sequencing
updated 5.0 years ago by 22k • written 5.0 years ago by ▴ 250
0
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1
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1.2k
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Comment: C: How to set up a reference file for BWA so that highly variable sites between con
5.1 years ago by DNAngel ▴ 250
0
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3
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1.2k
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How to set up a reference file for BWA so that highly variable sites between conserved regions are detected?
bwa samtools
5.1 years ago by DNAngel ▴ 250
0
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0
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1.5k
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Comment: C: How do you run codeml for two genes in one file but with 1 species tree?
5.1 years ago by DNAngel ▴ 250
0
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4
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1.5k
views
How do you run codeml for two genes in one file but with 1 species tree?
PAML codeml
updated 5.1 years ago by ★ 1.2k • written 5.1 years ago by ▴ 250
0
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0
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1.5k
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Comment: C: How do you run codeml for two genes in one file but with 1 species tree?
5.1 years ago by DNAngel ▴ 250
0
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0
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4.8k
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Comment: C: How to distinguish if a gene is a paralogue or an isoform?
5.2 years ago by DNAngel ▴ 250
8
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3
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4.8k
views
How to distinguish if a gene is a paralogue or an isoform?
paralogue isoform gene
updated 5.2 years ago by ★ 1.9k • written 5.2 years ago by ▴ 250
0
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1
reply
2.5k
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Comment: C: Can BWA restart a calculation after a break?
5.2 years ago by DNAngel ▴ 250
0
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1
reply
2.5k
views
Comment: C: Can BWA restart a calculation after a break?
5.2 years ago by DNAngel ▴ 250
5
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9
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2.5k
views
Can BWA restart a calculation after a break?
bwa samtools
updated 5.2 years ago by 14k • written 5.2 years ago by ▴ 250
2
votes
1
reply
880
views
Do the lowercase bases seen in BAM files need to be reverse complemented in consensus?
BAM
updated 5.3 years ago by 104k • written 5.3 years ago by ▴ 250
0
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1
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8.2k
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Comment: C: How to count the total aligned bases in BAM?
5.3 years ago by DNAngel ▴ 250
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0
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3.0k
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Comment: A: How to create consensus from bam file without IUPAC code?
5.3 years ago by DNAngel ▴ 250
13
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16
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7.2k
views
6 follow
Confused about how to generate a consensus sequence after bwa
bwa samtools mpileup
5.3 years ago by DNAngel ▴ 250
1
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0
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7.2k
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Comment: C: Confused about how to generate a consensus sequence after bwa
5.3 years ago by DNAngel ▴ 250
0
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0
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4.1k
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Comment: C: Ngs Question ~ Consensus
5.3 years ago by DNAngel ▴ 250
0
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1
reply
7.2k
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Comment: C: Confused about how to generate a consensus sequence after bwa
5.3 years ago by DNAngel ▴ 250
0
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1
reply
7.2k
views
Comment: A: Confused about how to generate a consensus sequence after bwa
5.3 years ago by DNAngel ▴ 250
0
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0
replies
7.2k
views
Comment: C: Confused about how to generate a consensus sequence after bwa
5.3 years ago by DNAngel ▴ 250
1
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2
replies
3.8k
views
Answer: A: How to save trimmomatic terminal summary to an output file?
updated 5.4 years ago by 43k • written 5.4 years ago by ▴ 250
7
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5
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3.8k
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How to save trimmomatic terminal summary to an output file?
trimmomatic
5.4 years ago by DNAngel ▴ 250
0
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1
reply
1.7k
views
How do you make a tree file in R using a fasta MSA?
R
5.5 years ago by DNAngel ▴ 250
0
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2
replies
1.3k
views
How to keep a log of columns removed from edited MSA?
MEGA MSA Python
updated 6.2 years ago by 20 • written 6.3 years ago by ▴ 250
0
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0
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2.2k
views
Comment: C: makeblastdb.exe giving me an unclear error message when creating a database
6.5 years ago by DNAngel ▴ 250
0
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2
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2.2k
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Comment: C: makeblastdb.exe giving me an unclear error message when creating a database
6.5 years ago by DNAngel ▴ 250
0
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0
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2.2k
views
Comment: C: makeblastdb.exe giving me an unclear error message when creating a database
6.5 years ago by DNAngel ▴ 250
1
vote
7
replies
2.2k
views
makeblastdb.exe giving me an unclear error message when creating a database
blast
updated 6.5 years ago by 161k • written 6.5 years ago by ▴ 250
2
votes
1
reply
2.4k
views
How much does cleandata in PAML analysis remove?
PAML codeml cleandata
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 250
0
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0
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2.9k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
6.7 years ago by DNAngel ▴ 250
0
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11
replies
2.9k
views
Is there a way to do clustalo profile-profile alignment without adding gaps to first profile?
profile-profile alignment clustalo
6.7 years ago by DNAngel ▴ 250
0
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0
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2.9k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
6.7 years ago by DNAngel ▴ 250
0
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2
replies
2.9k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
6.7 years ago by DNAngel ▴ 250
0
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1
reply
2.9k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
6.7 years ago by DNAngel ▴ 250
0
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1
reply
2.9k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
6.7 years ago by DNAngel ▴ 250
0
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0
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2.9k
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Comment: C: aligning two MSA
6.7 years ago by DNAngel ▴ 250
0
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0
replies
2.9k
views
Comment: C: Is there a way to do clustalo profile-profile alignment without adding gaps to f
6.7 years ago by DNAngel ▴ 250
0
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1
reply
5.8k
views
Comment: C: How to change sequence ID or identifier for a set of sequence
6.8 years ago by DNAngel ▴ 250
0
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0
replies
1.5k
views
How to map exon data to CDS from one reference species?
exon cds exome protein mapping
updated 6.9 years ago by 20 • written 7.0 years ago by ▴ 250
1
vote
2
replies
86k
views
Comment: C: How To Extract A Sequence From A Big (6Gb) Multifasta File ?
7.0 years ago by DNAngel ▴ 250
198 results • Page 4 of 4
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