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Comment: Comment: kraken2 unclassified output does not work with paired reads?
3.3 years ago by DNAngel ▴ 250
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3.3k
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Comment: Comment: Bamtools stats and samtools flagstat produce different results and confusing my
3.3 years ago by DNAngel ▴ 250
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3.3k
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Comment: Comment: Bamtools stats and samtools flagstat produce different results and confusing my
3.3 years ago by DNAngel ▴ 250
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1
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3.3k
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Comment: Comment: Bamtools stats and samtools flagstat produce different results and confusing my
3.3 years ago by DNAngel ▴ 250
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3.7k
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Comment: Comment: Why does Kraken2 not produce taxon percentages with --report flag?
3.3 years ago by DNAngel ▴ 250
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3.7k
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Comment: Comment: Why does Kraken2 not produce taxon percentages with --report flag?
3.3 years ago by DNAngel ▴ 250
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3.7k
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Comment: Comment: Why does Kraken2 not produce taxon percentages with --report flag?
3.3 years ago by DNAngel ▴ 250
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3.7k
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Comment: Comment: Why does Kraken2 not produce taxon percentages with --report flag?
3.4 years ago by DNAngel ▴ 250
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1
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2.9k
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Comment: Comment: What do you do with the data processed after running metaspades/spades?
3.4 years ago by DNAngel ▴ 250
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2.9k
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Comment: Comment: What do you do with the data processed after running metaspades/spades?
3.4 years ago by DNAngel ▴ 250
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2.9k
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Comment: Comment: What do you do with the data processed after running metaspades/spades?
3.4 years ago by DNAngel ▴ 250
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7.7k
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Comment: C: How do you download the nt database for Kraken2?
3.6 years ago by DNAngel ▴ 250
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7.7k
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Comment: C: How do you download the nt database for Kraken2?
3.6 years ago by DNAngel ▴ 250
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7.7k
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Comment: C: How do you download the nt database for Kraken2?
3.6 years ago by DNAngel ▴ 250
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7.7k
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Comment: C: How do you download the nt database for Kraken2?
3.6 years ago by DNAngel ▴ 250
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1.0k
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Comment: C: What to do with mapped reads after assembly?
3.6 years ago by DNAngel ▴ 250
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1.6k
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Comment: C: Error when trying to convert BAM file to FASTQ.
3.6 years ago by DNAngel ▴ 250
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1.6k
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Comment: C: Error when trying to sort unmapped reads in samtools.
3.6 years ago by DNAngel ▴ 250
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1
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1.6k
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Comment: C: Error when trying to sort unmapped reads in samtools.
3.6 years ago by DNAngel ▴ 250
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1
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1.6k
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Comment: C: Error when trying to sort unmapped reads in samtools.
3.6 years ago by DNAngel ▴ 250
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1.6k
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Comment: C: Error when trying to sort unmapped reads in samtools.
3.6 years ago by DNAngel ▴ 250
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1.8k
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Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
3.6 years ago by DNAngel ▴ 250
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1
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1.8k
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Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
3.6 years ago by DNAngel ▴ 250
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1.8k
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Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
3.6 years ago by DNAngel ▴ 250
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7.7k
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Comment: C: How do you download the nt database for Kraken2?
3.6 years ago by DNAngel ▴ 250
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1.0k
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Comment: C: Papers/posts on best practises for dealing with Illumina reads?
3.6 years ago by DNAngel ▴ 250
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1.0k
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Comment: C: Papers/posts on best practises for dealing with Illumina reads?
3.6 years ago by DNAngel ▴ 250
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1.0k
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Comment: C: Papers/posts on best practises for dealing with Illumina reads?
3.6 years ago by DNAngel ▴ 250
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622
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Comment: C: Determining if the number of significant results between two categories is signi
3.9 years ago by DNAngel ▴ 250
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7.0k
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Comment: C: Optimize bwa mem in parallel on a SLURM cluster
4.9 years ago by DNAngel ▴ 250
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1.9k
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Comment: C: How to parallelize bwa mem for single-end data within a larger bash script?
4.9 years ago by DNAngel ▴ 250
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2.4k
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Comment: C: How do you extract longest transcript from fasta file using length and header ID
4.9 years ago by DNAngel ▴ 250
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13k
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Comment: C: Generate Consensus sequence from BAM file
4.9 years ago by DNAngel ▴ 250
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1.6k
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Comment: C: Does Abyss work on single-end Illumina reads only?
4.9 years ago by DNAngel ▴ 250
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1.6k
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Comment: C: Does Abyss work on single-end Illumina reads only?
4.9 years ago by DNAngel ▴ 250
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3.4k
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Comment: C: Split BAM into 1 BAM per contig
4.9 years ago by DNAngel ▴ 250
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2.4k
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Comment: C: How do you assemble contigs without using a reference genome?
4.9 years ago by DNAngel ▴ 250
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1
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2.4k
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Comment: C: How do you assemble contigs without using a reference genome?
4.9 years ago by DNAngel ▴ 250
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1
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9.7k
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Comment: C: How to generate contigs from bam alignment
4.9 years ago by DNAngel ▴ 250
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1
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2.4k
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Comment: C: How do you assemble contigs without using a reference genome?
4.9 years ago by DNAngel ▴ 250
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2.4k
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Comment: C: What do you do after obtaining sorted bam files?
4.9 years ago by DNAngel ▴ 250
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1
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2.4k
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Comment: C: What do you do after obtaining sorted bam files?
4.9 years ago by DNAngel ▴ 250
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2.4k
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Comment: C: What do you do after obtaining sorted bam files?
4.9 years ago by DNAngel ▴ 250
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1
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2.7k
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Comment: C: gene annotation using BAM files
5.0 years ago by DNAngel ▴ 250
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9.9k
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Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
5.0 years ago by DNAngel ▴ 250
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4.6k
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Comment: C: how to extract coding sequences (CDS) from a bam file or vcf file ?
5.0 years ago by DNAngel ▴ 250
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1
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9.9k
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Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
5.0 years ago by DNAngel ▴ 250
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16k
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Comment: C: Reads Per Contig From Sam File?
5.0 years ago by DNAngel ▴ 250
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4.8k
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Comment: C: Too Many Genes Under Positive Selection
5.0 years ago by DNAngel ▴ 250
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4.8k
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Comment: C: Too Many Genes Under Positive Selection
5.0 years ago by DNAngel ▴ 250
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