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0
votes
2
replies
6.1k
views
Is there a tool to calculate sequence similarity of sequences in a MSA?
alignment DNA
4.9 years ago by DNAngel ▴ 250
0
votes
0
replies
977
views
Theory question on dN/dS values for phylogeny
dNdS paml codeml
5.0 years ago by DNAngel ▴ 250
1
vote
7
replies
2.8k
views
Help with understanding PAML M0 output
PAML M0
updated 5.0 years ago by ★ 1.7k • written 5.0 years ago by ▴ 250
5
votes
4
replies
2.7k
views
Does Whole Exome Sequencing Include Mitochondrial Genome??
mitogenome exome whole exome sequencing
updated 5.0 years ago by 22k • written 5.0 years ago by ▴ 250
0
votes
3
replies
1.2k
views
How to set up a reference file for BWA so that highly variable sites between conserved regions are detected?
bwa samtools
5.1 years ago by DNAngel ▴ 250
0
votes
4
replies
1.5k
views
How do you run codeml for two genes in one file but with 1 species tree?
PAML codeml
updated 5.1 years ago by ★ 1.2k • written 5.1 years ago by ▴ 250
8
votes
3
replies
4.8k
views
How to distinguish if a gene is a paralogue or an isoform?
paralogue isoform gene
updated 5.2 years ago by ★ 1.9k • written 5.2 years ago by ▴ 250
5
votes
9
replies
2.5k
views
Can BWA restart a calculation after a break?
bwa samtools
updated 5.2 years ago by 14k • written 5.2 years ago by ▴ 250
2
votes
1
reply
880
views
Do the lowercase bases seen in BAM files need to be reverse complemented in consensus?
BAM
updated 5.3 years ago by 104k • written 5.3 years ago by ▴ 250
13
votes
16
replies
7.2k
views
6 follow
Confused about how to generate a consensus sequence after bwa
bwa samtools mpileup
5.3 years ago by DNAngel ▴ 250
7
votes
5
replies
3.8k
views
How to save trimmomatic terminal summary to an output file?
trimmomatic
5.4 years ago by DNAngel ▴ 250
0
votes
1
reply
1.7k
views
How do you make a tree file in R using a fasta MSA?
R
5.5 years ago by DNAngel ▴ 250
0
votes
2
replies
1.3k
views
How to keep a log of columns removed from edited MSA?
MEGA MSA Python
updated 6.2 years ago by 20 • written 6.3 years ago by ▴ 250
1
vote
7
replies
2.2k
views
makeblastdb.exe giving me an unclear error message when creating a database
blast
updated 6.5 years ago by 161k • written 6.5 years ago by ▴ 250
2
votes
1
reply
2.4k
views
How much does cleandata in PAML analysis remove?
PAML codeml cleandata
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 250
0
votes
11
replies
2.9k
views
Is there a way to do clustalo profile-profile alignment without adding gaps to first profile?
profile-profile alignment clustalo
6.7 years ago by DNAngel ▴ 250
0
votes
0
replies
1.5k
views
How to map exon data to CDS from one reference species?
exon cds exome protein mapping
updated 6.9 years ago by 20 • written 7.0 years ago by ▴ 250
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