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0
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How to set up a reference file for BWA so that highly variable sites between conserved regions are detected?
bwa samtools
3.9 years ago by DNAngel ▴ 240
0
votes
4
replies
1.2k
views
How do you run codeml for two genes in one file but with 1 species tree?
PAML codeml
updated 3.9 years ago by ▴ 900 • written 3.9 years ago by ▴ 240
8
votes
3
replies
3.9k
views
How to distinguish if a gene is a paralogue or an isoform?
paralogue isoform gene
updated 4.0 years ago by ★ 1.9k • written 4.0 years ago by ▴ 240
5
votes
9
replies
1.8k
views
Can BWA restart a calculation after a break?
bwa samtools
updated 4.0 years ago by 14k • written 4.0 years ago by ▴ 240
2
votes
1
reply
695
views
Do the lowercase bases seen in BAM files need to be reverse complemented in consensus?
BAM
updated 4.1 years ago by 102k • written 4.1 years ago by ▴ 240
13
votes
16
replies
5.3k
views
6 follow
Confused about how to generate a consensus sequence after bwa
bwa samtools mpileup
4.1 years ago by DNAngel ▴ 240
7
votes
5
replies
3.0k
views
How to save trimmomatic terminal summary to an output file?
trimmomatic
4.2 years ago by DNAngel ▴ 240
0
votes
1
reply
1.5k
views
How do you make a tree file in R using a fasta MSA?
R
4.3 years ago by DNAngel ▴ 240
0
votes
2
replies
1.1k
views
How to keep a log of columns removed from edited MSA?
MEGA MSA Python
updated 5.0 years ago by 20 • written 5.1 years ago by ▴ 240
1
vote
7
replies
1.9k
views
makeblastdb.exe giving me an unclear error message when creating a database
blast
updated 5.3 years ago by 152k • written 5.3 years ago by ▴ 240
2
votes
1
reply
2.1k
views
How much does cleandata in PAML analysis remove?
PAML codeml cleandata
updated 5.5 years ago by 34k • written 5.5 years ago by ▴ 240
0
votes
11
replies
2.3k
views
Is there a way to do clustalo profile-profile alignment without adding gaps to first profile?
profile-profile alignment clustalo
5.5 years ago by DNAngel ▴ 240
0
votes
0
replies
1.3k
views
How to map exon data to CDS from one reference species?
exon cds exome protein mapping
updated 5.7 years ago by 20 • written 5.8 years ago by ▴ 240
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