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300
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Comment: Comment: Why is DESeq2 normalization making my top feature have identical values across s
6 days ago by DNAngel ▴ 250
0
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1
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300
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Comment: Comment: Why is DESeq2 normalization making my top feature have identical values across s
6 days ago by DNAngel ▴ 250
1
vote
3
replies
300
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Why is DESeq2 normalization making my top feature have identical values across samples?
DESEQ2 WGCNA
6 days ago by DNAngel ▴ 250
0
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0
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110
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Should I keep taxa that have 0 counts when calculating alpha diversity?
Shannon-Weiner
13 days ago by DNAngel ▴ 250
0
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0
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828
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Comment: Comment: Samtools unmapped reads
14 months ago by DNAngel ▴ 250
0
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5
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828
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Samtools unmapped reads
samtools
14 months ago by DNAngel ▴ 250
0
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0
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828
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Comment: Comment: Samtools unmapped reads
14 months ago by DNAngel ▴ 250
0
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0
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976
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Comment: Comment: Samtools mapped and unmapped flags, what is the difference between the flags?
14 months ago by DNAngel ▴ 250
0
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1
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976
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Comment: Comment: Samtools mapped and unmapped flags, what is the difference between the flags?
14 months ago by DNAngel ▴ 250
0
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3
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976
views
Samtools mapped and unmapped flags, what is the difference between the flags?
samtools
14 months ago by DNAngel ▴ 250
2
votes
2
replies
582
views
How do you get functional/biological role of motifs?
JASPAR
updated 15 months ago by 4.5k • written 15 months ago by ▴ 250
0
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1
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1.1k
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Comment: Comment: How to get names and class information from a list of target IDs from the JASPAR
15 months ago by DNAngel ▴ 250
0
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1
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1.1k
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Comment: Comment: How to get names and class information from a list of target IDs from the JASPAR
15 months ago by DNAngel ▴ 250
0
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2
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1.1k
views
Comment: Comment: How to get names and class information from a list of target IDs from the JASPAR
15 months ago by DNAngel ▴ 250
2
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8
replies
1.1k
views
How to get names and class information from a list of target IDs from the JASPAR database?
JASPAR
updated 15 months ago by 81k • written 15 months ago by ▴ 250
0
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0
replies
673
views
Comment: Comment: Program to detect cis-regulatory modules for a non model species?
17 months ago by DNAngel ▴ 250
0
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0
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673
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Comment: Comment: Program to detect cis-regulatory modules for a non model species?
17 months ago by DNAngel ▴ 250
3
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3
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673
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Program to detect cis-regulatory modules for a non model species?
factors transcription
17 months ago by DNAngel ▴ 250
0
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1
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765
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Comment: Comment: How do you find transcription factors in a newly sequenced genome?
18 months ago by DNAngel ▴ 250
4
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3
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765
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How do you find transcription factors in a newly sequenced genome?
interproscan factors transcription
updated 18 months ago by ▴ 20 • written 18 months ago by ▴ 250
1
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1
reply
972
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Comment: Comment: How do you obtain a list of transcription factors from a genome?
18 months ago by DNAngel ▴ 250
0
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1
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972
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Comment: Comment: How do you obtain a list of transcription factors from a genome?
18 months ago by DNAngel ▴ 250
0
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0
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972
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Comment: Comment: How do you obtain a list of transcription factors from a genome?
18 months ago by DNAngel ▴ 250
0
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1
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972
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Comment: Comment: How do you obtain a list of transcription factors from a genome?
18 months ago by DNAngel ▴ 250
7
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8
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972
views
How do you obtain a list of transcription factors from a genome?
transcription-factor
updated 13 months ago by 43k • written 18 months ago by ▴ 250
0
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6
replies
1.8k
views
Confused about which database to use - nt or nr?
blast
updated 18 months ago by 11k • written 18 months ago by ▴ 250
0
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2
replies
664
views
What happened to the SparCC github repository?
sparcc
updated 24 months ago by ★ 1.9k • written 24 months ago by ▴ 250
0
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0
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4.6k
views
Comment: Comment: WGCNA exportNetworkToCytoscape issue!!
2.3 years ago by DNAngel ▴ 250
2
votes
8
replies
3.3k
views
Why does Kraken2 not produce taxon percentages with --report flag?
kraken2
updated 2.3 years ago by ▴ 100 • written 3.0 years ago by ▴ 250
0
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0
replies
608
views
Can I use DESeq2 to analyze my abundance dataset, which also happens to have a lot of zeros?
deseq2
2.5 years ago by DNAngel ▴ 250
0
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0
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2.1k
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Comment: Comment: Is there really a difference in blastn -task blastn and -task megablast when dea
2.5 years ago by DNAngel ▴ 250
0
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1
reply
2.1k
views
Comment: Comment: Is there really a difference in blastn -task blastn and -task megablast when dea
2.5 years ago by DNAngel ▴ 250
0
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4
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2.1k
views
Forum: Is there really a difference in blastn -task blastn and -task megablast when dealing with unmapped reads?
blastn
2.5 years ago by DNAngel ▴ 250
0
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0
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1.3k
views
Comment: Comment: WGCNA, what does it mean if no hub genes are identified?
2.6 years ago by DNAngel ▴ 250
0
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1
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1.3k
views
Comment: Comment: WGCNA, what does it mean if no hub genes are identified?
2.6 years ago by DNAngel ▴ 250
2
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4
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1.3k
views
WGCNA, what does it mean if no hub genes are identified?
WGCNA
2.6 years ago by DNAngel ▴ 250
1
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0
replies
581
views
R package for determining best model transformation for a dataset?
R
2.6 years ago by DNAngel ▴ 250
0
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1
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3.4k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
2.6 years ago by DNAngel ▴ 250
0
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0
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3.4k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
2.6 years ago by DNAngel ▴ 250
0
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1
reply
3.4k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
2.6 years ago by DNAngel ▴ 250
0
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2
replies
3.4k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
2.6 years ago by DNAngel ▴ 250
0
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0
replies
3.4k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
2.6 years ago by DNAngel ▴ 250
11
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15
replies
3.4k
views
Output of samtools view, what does the third column actually represent?
samtools
updated 2.6 years ago by 19k • written 2.6 years ago by ▴ 250
0
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2
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3.4k
views
Comment: Comment: Output of samtools view, what does the third column actually represent?
2.6 years ago by DNAngel ▴ 250
0
votes
0
replies
564
views
How to find out how many reads were used in contig assembly in metaSPADES?
metaspades
2.6 years ago by DNAngel ▴ 250
1
vote
1
reply
1.6k
views
How do you interpret Tukey's significance when there is no group clustering alone?
Tukey
2.6 years ago by DNAngel ▴ 250
0
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0
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1.6k
views
Answer: Answer: How do you interpret Tukey's significance when there is no group clustering alon
2.6 years ago by DNAngel ▴ 250
1
vote
1
reply
1.3k
views
What is the difference between using -max_target_seqs 1 -max_hsps 1 versus just the defaults and then filtering for top hit?
blast
updated 2.6 years ago by 141k • written 2.6 years ago by ▴ 250
0
votes
0
replies
522
views
R vegdist does not compute distances for all my sites
vegan vegdist R
updated 2.6 years ago by 43k • written 2.6 years ago by ▴ 250
3
votes
1
reply
1.9k
views
What is the recommended contig length to filter?
metaspades
updated 2.7 years ago by ★ 27k • written 2.7 years ago by ▴ 250
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