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833
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Comment: C: Error when trying to sort unmapped reads in samtools.
2.2 years ago by DNAngel ▴ 240
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0
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1.2k
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Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
2.2 years ago by DNAngel ▴ 240
0
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1
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1.2k
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Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
2.2 years ago by DNAngel ▴ 240
0
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6
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1.2k
views
FastQC Per sequence GC count always fails after trimmomatic?
fastqc trimmomatic
updated 2.2 years ago by 127k • written 2.2 years ago by ▴ 240
0
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0
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1.2k
views
Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
2.2 years ago by DNAngel ▴ 240
0
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2
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4.6k
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Comment: C: How do you download the nt database for Kraken2?
2.2 years ago by DNAngel ▴ 240
2
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13
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4.6k
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How do you download the nt database for Kraken2?
Kraken2 nt
updated 2.2 years ago by 127k • written 2.2 years ago by ▴ 240
0
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0
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605
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Comment: C: Papers/posts on best practises for dealing with Illumina reads?
2.2 years ago by DNAngel ▴ 240
0
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0
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605
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Comment: C: Papers/posts on best practises for dealing with Illumina reads?
2.2 years ago by DNAngel ▴ 240
0
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1
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605
views
Comment: C: Papers/posts on best practises for dealing with Illumina reads?
2.2 years ago by DNAngel ▴ 240
0
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6
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605
views
Papers/posts on best practises for dealing with Illumina reads?
assembly trimmomatic bwa-mem
updated 2.2 years ago by 70k • written 2.2 years ago by ▴ 240
0
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0
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446
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Comment: C: Determining if the number of significant results between two categories is signi
2.4 years ago by DNAngel ▴ 240
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2
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446
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Determining if the number of significant results between two categories is significantly different?
statistics
2.4 years ago by DNAngel ▴ 240
0
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0
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376
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How to know if it is missing a gene or assembly error?
BWA Bioinformatics Assembly
2.4 years ago by DNAngel ▴ 240
0
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0
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433
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PAML sample size question and variation in results
PAML
2.4 years ago by DNAngel ▴ 240
0
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0
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803
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Understanding PAML results between random-sites and clade model C.
PAML
2.5 years ago by DNAngel ▴ 240
2
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3
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1.3k
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How to parallelize bwa mem for single-end data within a larger bash script?
bash bwa-mem gnu-parallel
updated 3.4 years ago by 153k • written 3.4 years ago by ▴ 240
0
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0
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5.4k
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Comment: C: Optimize bwa mem in parallel on a SLURM cluster
3.4 years ago by DNAngel ▴ 240
0
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0
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1.3k
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Comment: C: How to parallelize bwa mem for single-end data within a larger bash script?
3.4 years ago by DNAngel ▴ 240
0
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0
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1.5k
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Comment: C: How do you extract longest transcript from fasta file using length and header ID
3.4 years ago by DNAngel ▴ 240
2
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2
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1.5k
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How do you extract longest transcript from fasta file using length and header IDs?
awk fasta
updated 3.4 years ago by 13k • written 3.4 years ago by ▴ 240
0
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0
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11k
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Comment: C: Generate Consensus sequence from BAM file
3.5 years ago by DNAngel ▴ 240
2
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1
reply
1.4k
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How to loop over a directory to set each file as a variable?
bash
3.5 years ago by DNAngel ▴ 240
1
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1
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1.0k
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Comment: C: Does Abyss work on single-end Illumina reads only?
3.5 years ago by DNAngel ▴ 240
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0
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1.0k
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Comment: C: Does Abyss work on single-end Illumina reads only?
3.5 years ago by DNAngel ▴ 240
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0
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1.6k
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Answer: A: How to get a VCF file for all variants in a specific gene and specific exon?
3.5 years ago by DNAngel ▴ 240
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0
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2.9k
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Comment: C: Split BAM into 1 BAM per contig
3.5 years ago by DNAngel ▴ 240
3
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7
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1.0k
views
Does Abyss work on single-end Illumina reads only?
Abyss
updated 3.5 years ago by 8.2k • written 3.5 years ago by ▴ 240
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0
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1.5k
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Comment: C: How do you assemble contigs without using a reference genome?
3.5 years ago by DNAngel ▴ 240
0
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1
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1.5k
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Comment: C: How do you assemble contigs without using a reference genome?
3.5 years ago by DNAngel ▴ 240
0
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1
reply
7.5k
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Comment: C: How to generate contigs from bam alignment
3.5 years ago by DNAngel ▴ 240
0
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1
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1.5k
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Comment: C: How do you assemble contigs without using a reference genome?
3.5 years ago by DNAngel ▴ 240
4
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6
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1.5k
views
How do you assemble contigs without using a reference genome?
assembly genome
updated 3.5 years ago by 34k • written 3.5 years ago by ▴ 240
0
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0
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1.5k
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Comment: C: What do you do after obtaining sorted bam files?
3.5 years ago by DNAngel ▴ 240
0
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1
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1.5k
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Comment: C: What do you do after obtaining sorted bam files?
3.5 years ago by DNAngel ▴ 240
1
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6
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1.5k
views
What do you do after obtaining sorted bam files?
bwa bam
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 240
0
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0
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1.5k
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Comment: C: What do you do after obtaining sorted bam files?
3.5 years ago by DNAngel ▴ 240
0
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1
reply
1.8k
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Comment: C: gene annotation using BAM files
3.5 years ago by DNAngel ▴ 240
0
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0
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8.6k
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Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
3.5 years ago by DNAngel ▴ 240
1
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0
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3.3k
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Answer: A: how to extract coding sequences (CDS) from a bam file or vcf file ?
3.5 years ago by DNAngel ▴ 240
0
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0
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3.3k
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Comment: C: how to extract coding sequences (CDS) from a bam file or vcf file ?
3.5 years ago by DNAngel ▴ 240
0
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1
reply
8.6k
views
Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
3.5 years ago by DNAngel ▴ 240
0
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0
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14k
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Comment: C: Reads Per Contig From Sam File?
3.5 years ago by DNAngel ▴ 240
0
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0
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621
views
How to obtain protein-coding sequences from assembled genome/exome dataset?
PAML bwa
3.5 years ago by DNAngel ▴ 240
0
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0
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4.2k
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Comment: C: Too Many Genes Under Positive Selection
3.5 years ago by DNAngel ▴ 240
0
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0
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4.2k
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Comment: C: Too Many Genes Under Positive Selection
3.5 years ago by DNAngel ▴ 240
0
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0
replies
565
views
How to test evolutionary rates for each species in a gene alignment?
evolutionary rate R
3.6 years ago by DNAngel ▴ 240
0
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0
replies
823
views
R package to calculate ancestral state characters using maximum parsimony?
R maximum parsimony ancestral states
3.8 years ago by DNAngel ▴ 240
0
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2
replies
5.1k
views
Is there a tool to calculate sequence similarity of sequences in a MSA?
alignment DNA
3.9 years ago by DNAngel ▴ 240
0
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0
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826
views
Theory question on dN/dS values for phylogeny
dNdS paml codeml
3.9 years ago by DNAngel ▴ 240
194 results • Page 3 of 4
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