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0
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11
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1.4k
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Error when trying to convert BAM file to FASTQ.
samtools bedtools
3.2 years ago by DNAngel ▴ 250
0
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1
reply
1.4k
views
Comment: C: Error when trying to sort unmapped reads in samtools.
3.2 years ago by DNAngel ▴ 250
0
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1
reply
1.4k
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Comment: C: Error when trying to sort unmapped reads in samtools.
3.2 years ago by DNAngel ▴ 250
0
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1
reply
1.4k
views
Comment: C: Error when trying to sort unmapped reads in samtools.
3.2 years ago by DNAngel ▴ 250
0
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0
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1.4k
views
Comment: C: Error when trying to sort unmapped reads in samtools.
3.2 years ago by DNAngel ▴ 250
0
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0
replies
1.7k
views
Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
3.2 years ago by DNAngel ▴ 250
0
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1
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1.7k
views
Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
3.2 years ago by DNAngel ▴ 250
0
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6
replies
1.7k
views
FastQC Per sequence GC count always fails after trimmomatic?
fastqc trimmomatic
updated 3.2 years ago by 141k • written 3.2 years ago by ▴ 250
0
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0
replies
1.7k
views
Comment: C: FastQC Per sequence GC count always fails after trimmomatic?
3.2 years ago by DNAngel ▴ 250
0
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2
replies
7.0k
views
Comment: C: How do you download the nt database for Kraken2?
3.2 years ago by DNAngel ▴ 250
2
votes
13
replies
7.0k
views
How do you download the nt database for Kraken2?
Kraken2 nt
updated 3.2 years ago by 141k • written 3.2 years ago by ▴ 250
0
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0
replies
900
views
Comment: C: Papers/posts on best practises for dealing with Illumina reads?
3.2 years ago by DNAngel ▴ 250
0
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0
replies
900
views
Comment: C: Papers/posts on best practises for dealing with Illumina reads?
3.3 years ago by DNAngel ▴ 250
0
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1
reply
900
views
Comment: C: Papers/posts on best practises for dealing with Illumina reads?
3.3 years ago by DNAngel ▴ 250
0
votes
6
replies
900
views
Papers/posts on best practises for dealing with Illumina reads?
assembly trimmomatic bwa-mem
updated 3.3 years ago by 82k • written 3.3 years ago by ▴ 250
0
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0
replies
578
views
Comment: C: Determining if the number of significant results between two categories is signi
3.5 years ago by DNAngel ▴ 250
0
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2
replies
578
views
Determining if the number of significant results between two categories is significantly different?
statistics
3.5 years ago by DNAngel ▴ 250
0
votes
0
replies
482
views
How to know if it is missing a gene or assembly error?
BWA Assembly
updated 11 months ago by 43k • written 3.5 years ago by ▴ 250
0
votes
0
replies
528
views
PAML sample size question and variation in results
PAML
3.5 years ago by DNAngel ▴ 250
0
votes
0
replies
985
views
Understanding PAML results between random-sites and clade model C.
PAML
3.6 years ago by DNAngel ▴ 250
2
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3
replies
1.8k
views
How to parallelize bwa mem for single-end data within a larger bash script?
bash bwa-mem gnu-parallel
updated 4.5 years ago by 161k • written 4.5 years ago by ▴ 250
0
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0
replies
6.7k
views
Comment: C: Optimize bwa mem in parallel on a SLURM cluster
4.5 years ago by DNAngel ▴ 250
0
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0
replies
1.8k
views
Comment: C: How to parallelize bwa mem for single-end data within a larger bash script?
4.5 years ago by DNAngel ▴ 250
0
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0
replies
2.2k
views
Comment: C: How do you extract longest transcript from fasta file using length and header ID
4.5 years ago by DNAngel ▴ 250
2
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2
replies
2.2k
views
How do you extract longest transcript from fasta file using length and header IDs?
awk fasta
updated 4.5 years ago by 13k • written 4.5 years ago by ▴ 250
0
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0
replies
12k
views
Comment: C: Generate Consensus sequence from BAM file
4.5 years ago by DNAngel ▴ 250
2
votes
1
reply
1.8k
views
How to loop over a directory to set each file as a variable?
bash
4.5 years ago by DNAngel ▴ 250
1
vote
1
reply
1.5k
views
Comment: C: Does Abyss work on single-end Illumina reads only?
4.5 years ago by DNAngel ▴ 250
0
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0
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1.5k
views
Comment: C: Does Abyss work on single-end Illumina reads only?
4.5 years ago by DNAngel ▴ 250
0
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0
replies
1.7k
views
Answer: A: How to get a VCF file for all variants in a specific gene and specific exon?
4.5 years ago by DNAngel ▴ 250
0
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0
replies
3.3k
views
Comment: C: Split BAM into 1 BAM per contig
4.5 years ago by DNAngel ▴ 250
3
votes
7
replies
1.5k
views
Does Abyss work on single-end Illumina reads only?
Abyss
updated 4.5 years ago by 8.2k • written 4.5 years ago by ▴ 250
0
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0
replies
2.1k
views
Comment: C: How do you assemble contigs without using a reference genome?
4.5 years ago by DNAngel ▴ 250
0
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1
reply
2.1k
views
Comment: C: How do you assemble contigs without using a reference genome?
4.5 years ago by DNAngel ▴ 250
0
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1
reply
9.0k
views
Comment: C: How to generate contigs from bam alignment
4.5 years ago by DNAngel ▴ 250
0
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1
reply
2.1k
views
Comment: C: How do you assemble contigs without using a reference genome?
4.6 years ago by DNAngel ▴ 250
4
votes
6
replies
2.1k
views
How do you assemble contigs without using a reference genome?
assembly genome
updated 4.6 years ago by 35k • written 4.6 years ago by ▴ 250
0
votes
0
replies
2.2k
views
Comment: C: What do you do after obtaining sorted bam files?
4.6 years ago by DNAngel ▴ 250
0
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1
reply
2.2k
views
Comment: C: What do you do after obtaining sorted bam files?
4.6 years ago by DNAngel ▴ 250
1
vote
6
replies
2.2k
views
What do you do after obtaining sorted bam files?
bwa bam
updated 4.6 years ago by 14k • written 4.6 years ago by ▴ 250
0
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0
replies
2.2k
views
Comment: C: What do you do after obtaining sorted bam files?
4.6 years ago by DNAngel ▴ 250
0
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1
reply
2.4k
views
Comment: C: gene annotation using BAM files
4.6 years ago by DNAngel ▴ 250
0
votes
0
replies
9.6k
views
Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
4.6 years ago by DNAngel ▴ 250
1
vote
0
replies
4.3k
views
Answer: A: how to extract coding sequences (CDS) from a bam file or vcf file ?
4.6 years ago by DNAngel ▴ 250
0
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0
replies
4.3k
views
Comment: C: how to extract coding sequences (CDS) from a bam file or vcf file ?
4.6 years ago by DNAngel ▴ 250
0
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1
reply
9.6k
views
Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
4.6 years ago by DNAngel ▴ 250
0
votes
0
replies
16k
views
Comment: C: Reads Per Contig From Sam File?
4.6 years ago by DNAngel ▴ 250
0
votes
0
replies
773
views
How to obtain protein-coding sequences from assembled genome/exome dataset?
PAML bwa
4.6 years ago by DNAngel ▴ 250
0
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0
replies
4.7k
views
Comment: C: Too Many Genes Under Positive Selection
4.6 years ago by DNAngel ▴ 250
0
votes
0
replies
4.7k
views
Comment: C: Too Many Genes Under Positive Selection
4.6 years ago by DNAngel ▴ 250
198 results • Page 3 of 4
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