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2
votes
13
replies
4.3k
views
How do you download the nt database for Kraken2?
Kraken2 nt
updated 2.0 years ago by 125k • written 2.0 years ago by ▴ 240
0
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0
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583
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Comment: C: Papers/posts on best practises for dealing with Illumina reads?
2.0 years ago by DNAngel ▴ 240
0
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0
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583
views
Comment: C: Papers/posts on best practises for dealing with Illumina reads?
2.0 years ago by DNAngel ▴ 240
0
votes
1
reply
583
views
Comment: C: Papers/posts on best practises for dealing with Illumina reads?
2.0 years ago by DNAngel ▴ 240
0
votes
6
replies
583
views
Papers/posts on best practises for dealing with Illumina reads?
assembly trimmomatic bwa-mem
updated 2.0 years ago by 68k • written 2.0 years ago by ▴ 240
0
votes
0
replies
437
views
Comment: C: Determining if the number of significant results between two categories is signi
2.2 years ago by DNAngel ▴ 240
0
votes
2
replies
437
views
Determining if the number of significant results between two categories is significantly different?
statistics
2.2 years ago by DNAngel ▴ 240
0
votes
0
replies
358
views
How to know if it is missing a gene or assembly error?
BWA Bioinformatics Assembly
2.2 years ago by DNAngel ▴ 240
0
votes
0
replies
420
views
PAML sample size question and variation in results
PAML
2.3 years ago by DNAngel ▴ 240
0
votes
0
replies
778
views
Understanding PAML results between random-sites and clade model C.
PAML
2.3 years ago by DNAngel ▴ 240
2
votes
3
replies
1.3k
views
How to parallelize bwa mem for single-end data within a larger bash script?
bash bwa-mem gnu-parallel
updated 3.3 years ago by 152k • written 3.3 years ago by ▴ 240
0
votes
0
replies
5.1k
views
Comment: C: Optimize bwa mem in parallel on a SLURM cluster
3.3 years ago by DNAngel ▴ 240
0
votes
0
replies
1.3k
views
Comment: C: How to parallelize bwa mem for single-end data within a larger bash script?
3.3 years ago by DNAngel ▴ 240
0
votes
0
replies
1.4k
views
Comment: C: How do you extract longest transcript from fasta file using length and header ID
3.3 years ago by DNAngel ▴ 240
2
votes
2
replies
1.4k
views
How do you extract longest transcript from fasta file using length and header IDs?
awk fasta
updated 3.3 years ago by 13k • written 3.3 years ago by ▴ 240
0
votes
0
replies
11k
views
Comment: C: Generate Consensus sequence from BAM file
3.3 years ago by DNAngel ▴ 240
2
votes
1
reply
1.4k
views
How to loop over a directory to set each file as a variable?
bash
3.3 years ago by DNAngel ▴ 240
1
vote
1
reply
965
views
Comment: C: Does Abyss work on single-end Illumina reads only?
3.3 years ago by DNAngel ▴ 240
0
votes
0
replies
965
views
Comment: C: Does Abyss work on single-end Illumina reads only?
3.3 years ago by DNAngel ▴ 240
0
votes
0
replies
1.6k
views
Answer: A: How to get a VCF file for all variants in a specific gene and specific exon?
3.3 years ago by DNAngel ▴ 240
0
votes
0
replies
2.9k
views
Comment: C: Split BAM into 1 BAM per contig
3.3 years ago by DNAngel ▴ 240
3
votes
7
replies
965
views
Does Abyss work on single-end Illumina reads only?
Abyss
updated 3.3 years ago by 8.2k • written 3.3 years ago by ▴ 240
0
votes
0
replies
1.4k
views
Comment: C: How do you assemble contigs without using a reference genome?
3.3 years ago by DNAngel ▴ 240
0
votes
1
reply
1.4k
views
Comment: C: How do you assemble contigs without using a reference genome?
3.3 years ago by DNAngel ▴ 240
0
votes
1
reply
7.2k
views
Comment: C: How to generate contigs from bam alignment
3.3 years ago by DNAngel ▴ 240
0
votes
1
reply
1.4k
views
Comment: C: How do you assemble contigs without using a reference genome?
3.3 years ago by DNAngel ▴ 240
4
votes
6
replies
1.4k
views
How do you assemble contigs without using a reference genome?
assembly genome
updated 3.3 years ago by 34k • written 3.3 years ago by ▴ 240
0
votes
0
replies
1.5k
views
Comment: C: What do you do after obtaining sorted bam files?
3.3 years ago by DNAngel ▴ 240
0
votes
1
reply
1.5k
views
Comment: C: What do you do after obtaining sorted bam files?
3.3 years ago by DNAngel ▴ 240
1
vote
6
replies
1.5k
views
What do you do after obtaining sorted bam files?
bwa bam
updated 3.3 years ago by 13k • written 3.3 years ago by ▴ 240
0
votes
0
replies
1.5k
views
Comment: C: What do you do after obtaining sorted bam files?
3.3 years ago by DNAngel ▴ 240
0
votes
1
reply
1.8k
views
Comment: C: gene annotation using BAM files
3.3 years ago by DNAngel ▴ 240
0
votes
0
replies
8.4k
views
Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
3.3 years ago by DNAngel ▴ 240
1
vote
0
replies
3.1k
views
Answer: A: how to extract coding sequences (CDS) from a bam file or vcf file ?
3.3 years ago by DNAngel ▴ 240
0
votes
0
replies
3.1k
views
Comment: C: how to extract coding sequences (CDS) from a bam file or vcf file ?
3.3 years ago by DNAngel ▴ 240
0
votes
1
reply
8.4k
views
Comment: C: Using BWA Index and i get 5 output files, but BWA-mem asks for just 1
3.3 years ago by DNAngel ▴ 240
0
votes
0
replies
14k
views
Comment: C: Reads Per Contig From Sam File?
3.3 years ago by DNAngel ▴ 240
0
votes
0
replies
601
views
How to obtain protein-coding sequences from assembled genome/exome dataset?
PAML bwa
3.3 years ago by DNAngel ▴ 240
0
votes
0
replies
4.2k
views
Comment: C: Too Many Genes Under Positive Selection
3.3 years ago by DNAngel ▴ 240
0
votes
0
replies
4.2k
views
Comment: C: Too Many Genes Under Positive Selection
3.3 years ago by DNAngel ▴ 240
0
votes
0
replies
546
views
How to test evolutionary rates for each species in a gene alignment?
evolutionary rate R
3.5 years ago by DNAngel ▴ 240
0
votes
0
replies
802
views
R package to calculate ancestral state characters using maximum parsimony?
R maximum parsimony ancestral states
3.7 years ago by DNAngel ▴ 240
0
votes
2
replies
5.0k
views
Is there a tool to calculate sequence similarity of sequences in a MSA?
alignment DNA
3.7 years ago by DNAngel ▴ 240
0
votes
0
replies
811
views
Theory question on dN/dS values for phylogeny
dNdS paml codeml
3.8 years ago by DNAngel ▴ 240
0
votes
1
reply
2.2k
views
Comment: C: Help with understanding PAML M0 output
3.8 years ago by DNAngel ▴ 240
0
votes
1
reply
2.2k
views
Comment: C: Help with understanding PAML M0 output
3.8 years ago by DNAngel ▴ 240
0
votes
1
reply
2.2k
views
Comment: C: Help with understanding PAML M0 output
3.8 years ago by DNAngel ▴ 240
1
vote
7
replies
2.2k
views
Help with understanding PAML M0 output
PAML M0
updated 3.8 years ago by ★ 1.2k • written 3.8 years ago by ▴ 240
5
votes
4
replies
1.7k
views
Does Whole Exome Sequencing Include Mitochondrial Genome??
mitogenome exome whole exome sequencing
updated 3.8 years ago by 21k • written 3.8 years ago by ▴ 240
0
votes
1
reply
965
views
Comment: C: How to set up a reference file for BWA so that highly variable sites between con
3.9 years ago by DNAngel ▴ 240
188 results • Page 3 of 4
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