User: mysisayk

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mysisayk0
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Posts by mysisayk

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LD, LD-decay and Correlation Coefficients of SNP loci
... Dear all, I am working on GWAS of yellow rust resistance in durum wheat. I have ~ 9k SNPs genotype data generated from 293 individuals. The data is converted in to numerical format with 1 and -1 for the most and less frequent homozygote genotypes respectively (AA, CC, GG, &TT), -9 for the missin ...
R snp written 4 months ago by mysisayk0 • updated 4 months ago by aays60
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Comment: C: How to convert SNP genotype data to numerical data?
... Hello, zx8754 for structure software: the input data format uses ; A=1, C=2, G=3, T=4 and NoCall(missing value) = -9; so using the numbers will give us AA=11, CC=22, GG=33, TT=44; and any heterozygous will have the combination e.g. AT=14, CG=23 etc. I don't have strong background with softwares a ...
written 7 months ago by mysisayk0
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How to convert SNP genotype data to numerical data?
... **Description**: I have a SNP genotype data (i.e. AA, AC, CA, AG, GA, AT, TA, CC, CG, GC, CT, TC, GG, GT, TG and TT) and BB type) of durum wheat (allotetraploid) obtained from genotyping through 35k axiom array and analysed by Axiom analysis suit v2. Can any one help with how to convert it to nu ...
snp written 7 months ago by mysisayk0 • updated 7 months ago by bioinfovs0

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