User: shafnaasmy.v.s

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Posts by shafnaasmy.v.s

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Comment: C: cufflinks error on ubuntu 16.04
... hi command used was sudo apt-get install cufflinks error Reading package lists... Done Building dependency tree Reading state information... Done Package cufflinks is not available, but is referred to by another package. This may mean that the package is missing, has been obsoleted, or is only a ...
written 18 days ago by shafnaasmy.v.s0
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cufflinks error on ubuntu 16.04
... hi I am working in ubuntu 16.04 i wanted to install cufflinks 2.2.1 but i get error saying Reading package lists... Done Building dependency tree Reading state information... Done Package cufflinks is not available, but is referred to by another package. This may mean that the package is ...
next-gen rna-seq written 19 days ago by shafnaasmy.v.s0
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cufflinks results is all zeros...??
... hi i used bowtie -->samtools 0.1--->cufflinks i did cufflinks for each dataset and i got all the four files as a result but the resulting **gene.fpkm.tracking** file looks like this tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage FPKM FPKM_conf_ ...
next-gen cufflinks rna-seq written 28 days ago by shafnaasmy.v.s0
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Comment: C: samtools updation in linux
... will try it ...and will be back ...
written 28 days ago by shafnaasmy.v.s0
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Comment: C: samtools updation in linux
... thank u and ill try it and get back ...
written 28 days ago by shafnaasmy.v.s0
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samtools updation in linux
... HI I am using samtool 0.1.19..its a older version ... how to update the samtools 1.4?..i tired "sudo apt-get install samtools 1.4"--> but i am getting error Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distr ...
next-gen sam written 4 weeks ago by shafnaasmy.v.s0 • updated 4 weeks ago by WouterDeCoster17k
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Comment: C: sam to bam conversion
... this is the command i used samtools sort humangenome_1.bam humangenome_1_sorted my samtools version is 0.1.19 ...
written 4 weeks ago by shafnaasmy.v.s0
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Comment: C: sam to bam conversion
... samtool 0.1.19..its a older version ...i also ahave another question how to update the samtools 1.4?..i tired "sudo apt-get install samtools 1.4"--> but i am getting error Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the ...
written 4 weeks ago by shafnaasmy.v.s0
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sam to bam conversion
... hi i m working on rna seq analysis in human i got my sam file @HD VN:1.0 SO:unsorted @SQ SN:NC_000001.11 LN:248956422 @SQ SN:NT_187361.1 LN:175055 @SQ SN:NT_187362.1 LN:32032 @SQ SN:NT_187363.1 LN:127682 @SQ SN:NT_187364.1 LN:66860 @SQ SN:NT_187365.1 LN:40176 @SQ ...
next-gen rna-seq sequencing written 4 weeks ago by shafnaasmy.v.s0 • updated 4 weeks ago by shmaisrael0

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