User: shafnaasmy.v.s

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Posts by shafnaasmy.v.s

<prev • 7 results • page 1 of 1 • next >
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cufflinks results is all zeros...??
... hi i used bowtie -->samtools 0.1--->cufflinks i did cufflinks for each dataset and i got all the four files as a result but the resulting **gene.fpkm.tracking** file looks like this tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage FPKM FPKM_conf_ ...
next-gen cufflinks rna-seq written 1 day ago by shafnaasmy.v.s0
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Comment: C: samtools updation in linux
... will try it ...and will be back ...
written 1 day ago by shafnaasmy.v.s0
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Comment: C: samtools updation in linux
... thank u and ill try it and get back ...
written 1 day ago by shafnaasmy.v.s0
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samtools updation in linux
... HI I am using samtool 0.1.19..its a older version ... how to update the samtools 1.4?..i tired "sudo apt-get install samtools 1.4"--> but i am getting error Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distr ...
next-gen sam written 4 days ago by shafnaasmy.v.s0 • updated 4 days ago by WouterDeCoster16k
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Comment: C: sam to bam conversion
... this is the command i used samtools sort humangenome_1.bam humangenome_1_sorted my samtools version is 0.1.19 ...
written 4 days ago by shafnaasmy.v.s0
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Comment: C: sam to bam conversion
... samtool 0.1.19..its a older version ...i also ahave another question how to update the samtools 1.4?..i tired "sudo apt-get install samtools 1.4"--> but i am getting error Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the ...
written 4 days ago by shafnaasmy.v.s0
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sam to bam conversion
... hi i m working on rna seq analysis in human i got my sam file @HD VN:1.0 SO:unsorted @SQ SN:NC_000001.11 LN:248956422 @SQ SN:NT_187361.1 LN:175055 @SQ SN:NT_187362.1 LN:32032 @SQ SN:NT_187363.1 LN:127682 @SQ SN:NT_187364.1 LN:66860 @SQ SN:NT_187365.1 LN:40176 @SQ ...
next-gen rna-seq sequencing written 7 days ago by shafnaasmy.v.s0 • updated 4 days ago by shmaisrael0

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