User: shafnaasmy.v.s

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Posts by shafnaasmy.v.s

<prev • 12 results • page 1 of 2 • next >
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Lnc RNA,RNA Seq
... hi I have a RNA seq data and planning to do LNC rna analysis. LNC Rna analysis can be done only on small RNA seq or can be done using Rna seq data? ...
rna-seq lncrna written 4 days ago by shafnaasmy.v.s0 • updated 4 days ago by Devon Ryan71k
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3D structure for proteins
... hi i have a set of protein names.i want to now if they have structure or not..the list is very long so i want to submit it in one go and find out. can anyone help me out ...
pdb 3d protein structure gene list written 10 days ago by shafnaasmy.v.s0 • updated 5 days ago by yamule80
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miRNA identification from RNA seq data
... HI i am working on RNA seq data and not small RNA data.. i want to know how to finf the miRNA from RNA seq data. thanks in advance plz help ...
sequencing next-gen rna-seq mirna written 11 weeks ago by shafnaasmy.v.s0 • updated 11 weeks ago by Buffo480
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Comment: C: cufflinks error on ubuntu 16.04
... hi command used was sudo apt-get install cufflinks error Reading package lists... Done Building dependency tree Reading state information... Done Package cufflinks is not available, but is referred to by another package. This may mean that the package is missing, has been obsoleted, or is only a ...
written 5 months ago by shafnaasmy.v.s0
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cufflinks error on ubuntu 16.04
... hi I am working in ubuntu 16.04 i wanted to install cufflinks 2.2.1 but i get error saying Reading package lists... Done Building dependency tree Reading state information... Done Package cufflinks is not available, but is referred to by another package. This may mean that the package is ...
next-gen rna-seq written 5 months ago by shafnaasmy.v.s0
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cufflinks results is all zeros...??
... hi i used bowtie -->samtools 0.1--->cufflinks i did cufflinks for each dataset and i got all the four files as a result but the resulting **gene.fpkm.tracking** file looks like this tracking_id class_code nearest_ref_id gene_id gene_short_name tss_id locus length coverage FPKM FPKM_conf_ ...
next-gen cufflinks rna-seq written 6 months ago by shafnaasmy.v.s0
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Comment: C: samtools updation in linux
... will try it ...and will be back ...
written 6 months ago by shafnaasmy.v.s0
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Comment: C: samtools updation in linux
... thank u and ill try it and get back ...
written 6 months ago by shafnaasmy.v.s0
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samtools updation in linux
... HI I am using samtool 0.1.19..its a older version ... how to update the samtools 1.4?..i tired "sudo apt-get install samtools 1.4"--> but i am getting error Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distr ...
next-gen sam written 6 months ago by shafnaasmy.v.s0 • updated 6 months ago by WouterDeCoster22k
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Comment: C: sam to bam conversion
... this is the command i used samtools sort humangenome_1.bam humangenome_1_sorted my samtools version is 0.1.19 ...
written 6 months ago by shafnaasmy.v.s0

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