User: sey

sey • 0

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Posts by sey

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Merging CNVs from multiple tumor samples from the same patient

... I have multiple metastatic samples from the same cancer patient. I have used FACETS to call CNVs for each sample. Now, I would like to merge the individual results in a table where each row is a CNV, and each column is a sample. Because different samples have different segments, I merge the sample ...

multiple samples ngs facets cnv metastasis written 9 months ago by sey • 0 • updated 9 months ago by markus.riester • 260

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bam-readcount values are higher than Mutect results

... I use Mutect to find somatic mutations in multiple tumor samples (to be used in clonality analysis). I don't get the readcounts if the caller did not identify a somatic mutation in a sample. I'm using bam-readcount to fill in the empty values after merging Mutect results from different samples. Wher ...

bam-readcount written 13 months ago by sey • 0 • updated 13 months ago by Chris Miller ♦ 19k

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