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Posts by sey
... I am getting different gene expression ranks (within-sample) for TPM and RPKM values. Is this possible? ...
... I have multiple metastatic samples from the same cancer patient. I have used FACETS to call CNVs for each sample. Now, I would like to merge the individual results in a table where each row is a CNV, and each column is a sample. Because different samples have different segments, I merge the sample ...
... I use Mutect to find somatic mutations in multiple tumor samples (to be used in clonality analysis). I don't get the readcounts if the caller did not identify a somatic mutation in a sample. I'm using bam-readcount to fill in the empty values after merging Mutect results from different samples. Wher ...
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