User: vivien.wee16

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Posts by vivien.wee16

<prev • 6 results • page 1 of 1 • next >
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TOMplot in WGCNA
... Hi, I am trying to construct a coexpression network using WGCNA. Everything was fine until I wanted to make a TOMplot. When I was calculating TOM using TOMsimilarityFromExpr function, the dataframe that it returned was full of NaNs and of 1s diagonally across the dataframe. The only difference I ma ...
wgcna written 7 days ago by vivien.wee160
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Scoring scheme in GSEA
... Hi, What is the difference between classic and the default weighted p=1 under the scoring scheme in GSEA? ...
gsea written 11 days ago by vivien.wee160 • updated 11 days ago by Santosh Anand2.7k
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Comment: C: p-values in GSEA
... Got it! The random number seed was set as default instead of a specific integer. Thank you! ...
written 14 days ago by vivien.wee160
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p-values in GSEA
... Hi, When I was performing my analysis with GSEA, I noticed that the p-value changed (by ~0.005) when I changed the order of genes in my gene set. I know that the order of genes in the gene set doesn't matter but does anyone have any idea about the reason to the fluctuation of p-value? Thanks! ...
gsea written 14 days ago by vivien.wee160 • updated 14 days ago by Giovanni M Dall'Olio25k
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Comment: C: Variant calling following multiple sequence alignment
... Thank you, snp-sites works for my analyses! ...
written 3 months ago by vivien.wee160
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(Closed) Variant calling following multiple sequence alignment
... Hi everyone, Are there any tools/pipelines available that I can use to call for variants/SNPs following multiple sequence alignment? I need something that can call for variants between the sequences, and not from a reference genome. Thank you in advance! ...
alignment snp written 3 months ago by vivien.wee160

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