User: vivien.wee16

gravatar for vivien.wee16
Reputation:
0
Status:
New User
Last seen:
1 month ago
Joined:
5 months ago
Email:
v***********@imperial.ac.uk

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by vivien.wee16

<prev • 6 results • page 1 of 1 • next >
0
votes
0
answers
149
views
0
answers
TOMplot in WGCNA
... Hi, I am trying to construct a coexpression network using WGCNA. Everything was fine until I wanted to make a TOMplot. When I was calculating TOM using TOMsimilarityFromExpr function, the dataframe that it returned was full of NaNs and of 1s diagonally across the dataframe. The only difference I ma ...
wgcna written 8 weeks ago by vivien.wee160 • updated 12 days ago by Biostar ♦♦ 20
1
vote
1
answer
161
views
1
answer
Scoring scheme in GSEA
... Hi, What is the difference between classic and the default weighted p=1 under the scoring scheme in GSEA? ...
gsea written 9 weeks ago by vivien.wee160 • updated 9 weeks ago by Santosh Anand2.9k
0
votes
1
answer
207
views
1
answers
Comment: C: p-values in GSEA
... Got it! The random number seed was set as default instead of a specific integer. Thank you! ...
written 9 weeks ago by vivien.wee160
5
votes
1
answer
207
views
1
answer
p-values in GSEA
... Hi, When I was performing my analysis with GSEA, I noticed that the p-value changed (by ~0.005) when I changed the order of genes in my gene set. I know that the order of genes in the gene set doesn't matter but does anyone have any idea about the reason to the fluctuation of p-value? Thanks! ...
gsea written 9 weeks ago by vivien.wee160 • updated 9 weeks ago by Giovanni M Dall'Olio25k
0
votes
1
answer
265
views
1
answers
Comment: C: Variant calling following multiple sequence alignment
... Thank you, snp-sites works for my analyses! ...
written 4 months ago by vivien.wee160
4
votes
1
answer
265
views
1
answer
(Closed) Variant calling following multiple sequence alignment
... Hi everyone, Are there any tools/pipelines available that I can use to call for variants/SNPs following multiple sequence alignment? I need something that can call for variants between the sequences, and not from a reference genome. Thank you in advance! ...
alignment snp written 5 months ago by vivien.wee160

Latest awards to vivien.wee16

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1741 users visited in the last hour