User: Tears

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Tears 0
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Posts by Tears

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estimating inbreeding from runs of homozygosity
... Hello, I am using data genotyped on 777K and 150K to estimate the level of relatedness in cattle. the formula is as follows F=L_roh/L_auto, where L_roh is the sum of ROH per individual and L_auto is the total length of the autosome covered by snps. How do I estimate the length of the autosomal ge ...
roh snp written 22 months ago by Tears 0 • updated 22 months ago by Kevin Blighe52k
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Answer: A: Merging files in plink
... Good day! Thank you for your responses Petr Ponomarenko and chrchang523, my command is working. My mistake was not specifying that I'm working on a cow genome, I added --cow to my command and I got all my chromosomes. Thank you ...
written 2.6 years ago by Tears 0
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Merging files in plink
... Hello! I am trying to merge files in plink, I used the following command:- ./plink --file data1 --merge data2.ped data2.map --noweb --recode --out merged. In my out file "merged file", some chromosomes are missing, which command can I use to merge files without losing data? Thank you in advance ...
gwas plink snp written 2.6 years ago by Tears 0 • updated 21 months ago by Leonida Monaco20
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using Plink to detect runs of homozygosity
... Hello! I am new to plink and i am using it to detect the runs of homozygosity ROH. which output file do I use to estimate inbreeding, the plink.hom or plink.indv? ...
genome snp written 2.6 years ago by Tears 0

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Scholar 2.6 years ago, created an answer that has been accepted. For A: Merging files in plink

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