User: pilyric

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pilyric0
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Posts by pilyric

<prev • 6 results • page 1 of 1 • next >
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MAFFT error: Allocation error in load1SeqWithoutName_realloc
... Hi, I was trying to align several sequences with MAFFT 7.271: mafft --globalpair --maxiterate 1000 in.fasta > out.fasta Then this error occured: Allocation error in load1SeqWithoutName_realloc I changed another test fasta file and it worked. What should I do to fix my in.fasta? ...
software error alignment written 7 months ago by pilyric0 • updated 5 months ago by Biostar ♦♦ 20
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Comment: C: Error with fastq-dump
... ok, I'll try this. Thank you. ...
written 8 months ago by pilyric0
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Comment: C: Error with fastq-dump
... I tried another sra and it worked. Thank you! ...
written 8 months ago by pilyric0
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Error with fastq-dump
... Hi, I have downloaded some .sra files from NCBI. But when I tried to convert sra files to fastq, an error occured: fastq-dump -I --split-files SRR1055837.sra 2018-01-14T08:22:41 fastq-dump.2.8.2 err: data bad version while reading binary large object within virtual database module - failed SRR1055 ...
sequence written 8 months ago by pilyric0
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What should I do if i want Stringtie to assemble mitochondrial transcripts?
... Hi, I'm working on some RNA-seq data, but when I tried to use Stringtie to assemble transcripts, some problem occured. It seems that Stringtie uses exon and CDS annotation to assemble transcripts, but there's no annotation containing exon information of mtDNA. There's no exons in mtDNA indeed, but i ...
assembly rna-seq written 16 months ago by pilyric0
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Comment: C: Gene count table from STRINGTIE/BALLGOWN for WGCNA
... really helpful. thanks very much. ...
written 16 months ago by pilyric0

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