User: pilyric

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pilyric0
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Posts by pilyric

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Error with fastq-dump
... Hi, I have downloaded some .sra files from NCBI. But when I tried to convert sra files to fastq, an error occured: fastq-dump -I --split-files SRR1055837.sra 2018-01-14T08:22:41 fastq-dump.2.8.2 err: data bad version while reading binary large object within virtual database module - failed SRR1055 ...
sequence written 3 days ago by pilyric0
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What should I do if i want Stringtie to assemble mitochondrial transcripts?
... Hi, I'm working on some RNA-seq data, but when I tried to use Stringtie to assemble transcripts, some problem occured. It seems that Stringtie uses exon and CDS annotation to assemble transcripts, but there's no annotation containing exon information of mtDNA. There's no exons in mtDNA indeed, but i ...
assembly rna-seq written 8 months ago by pilyric0
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Comment: C: Gene count table from STRINGTIE/BALLGOWN for WGCNA
... really helpful. thanks very much. ...
written 8 months ago by pilyric0

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