User: Abdel

gravatar for Abdel
Abdel20
Reputation:
20
Status:
New User
Location:
France/Paris
Last seen:
2 months, 3 weeks ago
Joined:
1 year, 11 months ago
Email:
a***************@gmail.com

Posts by Abdel

<prev • 6 results • page 1 of 1 • next >
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Comment: C: LD-decay in a r2 vs distance(cm) plot
... Thnaks for sharing this tutorial. I have a question about `mapthin`: I used `.bim` files to thin my data, but when I run PLINK to do LD, I get an error message ( Invalid .bed file size (expected 22158 bytes)). That means my `.bed` file is steal unchanged (contains all genotypes). My question is : ...
written 11 weeks ago by Abdel20
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Comment: C: Create multiple files using awk
... Thank all for helping, and for advices. ...
written 3 months ago by Abdel20
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Comment: C: Create multiple files using awk
... Thanks for reply. I am a biologist and beginer in unix and data analysis :). I asked the question to reduce the time of searching in pdf courses. Abdel ...
written 3 months ago by Abdel20
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(Closed) Create multiple files using awk
... Hi, all I use awk to extract rows from a text file: awk 'NR==FNR{vals[$1];next} ($1) in vals' indiv.txt file1.txt > new_file1.txt But how can I use the same code for multiple files ? I can use : awk 'NR==FNR{vals[$1];next} ($1) in vals' indiv.txt file1.txt > new_file1.txt awk ...
grep awk sed bash written 3 months ago by Abdel20 • updated 3 months ago by finswimmer11k
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Comment: A: Genome-wide LD PLINK | empty file for chromosome 24
... Yes *Bos taurus*. `--chr-set `is required only for chromosome 27, 28 and 29. My only probleme is with chromosome 24. I am working on bfiles (the same thing if I work with ped and map files). ...
written 3 months ago by Abdel20
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Genome-wide LD PLINK | empty file for chromosome 24
... Hi everyone, I am working with genome wide data (SNPs) using plink and want to compute pairwize LD (r²) between SNPs for each chromosome (29 chromosomes). This is an example of script I used: plink --bfile myData1 --r2 --ld-window-r2 0 --out chr1 plink --bfile myData2 --r2 --ld-windo ...
genome ld plink snp written 3 months ago by Abdel20

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