User: felipe-bita

gravatar for felipe-bita
Reputation:
0
Status:
New User
Last seen:
23 hours ago
Joined:
1 year, 6 months ago
Email:
f**********@hotmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by felipe-bita

<prev • 4 results • page 1 of 1 • next >
0
votes
2
answers
73
views
2
answers
Answer: A: Find clones in a population using a vcf file.
... Thank you, chrchang523. I used this method and i think it worked, i tested it with other populations, and mine had a lot of samples considered clones of the mother. The other populations that was no doubt about the apomictic chracteristic had only few samples >0.354. It helped me a lot. Thanks ...
written 4 days ago by felipe-bita0
1
vote
2
answers
73
views
2
answers
Find clones in a population using a vcf file.
... Hi guys. I am looking for an approach to find if there is clones in my population using a VCF file. Basically, i have a population of 130 individuals and the mother of them. This is a population for breeding that was made by a open cross. The 131 samples were genotyped using GBS and the variants cal ...
clones vcf population snp gbs written 5 days ago by felipe-bita0
1
vote
0
answers
352
views
0
answers
(Closed) Getting sequences from a fasta file.
... Hi guys, I am facing a problem, basically i have a fasta file, CDS of O. sativa, and i have a list of genes that i want to take from the CDS and write them in another fasta file, this list consists of 16k genes so i cant do it manually. I am using linux and i have a little experience in bioperl, if ...
fasta perl linux cds written 18 months ago by felipe-bita0
0
votes
0
answers
471
views
0
answers
Parameter to consider a hit as a gene copy
... Hi guys, i am trying to identify single copy genes in rice, what i've done so far was blast the CDS against itself and parsing the results with bioperl. My problem now is that i don't know what i use to consider a hit as a gene copy, i am calculating the proportions, alignmentlength/querylength and ...
gene alignment blast written 18 months ago by felipe-bita0 • updated 17 months ago by Biostar ♦♦ 20

Latest awards to felipe-bita

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1636 users visited in the last hour