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Where to find known sites for mm39 used by GATK4 BaseRecalibrator?
BaseRecalibrator mouse gatk
2.8 years ago by 乙 ▴ 240
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1.3k
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Answer: Answer: Where to find known sites for mm39 used by GATK4 BaseRecalibrator?
2.8 years ago by 乙 ▴ 240
0
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0
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1.3k
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Comment: Comment: Where to find known sites for mm39 used by GATK4 BaseRecalibrator?
2.8 years ago by 乙 ▴ 240
22
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24
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21k
views
8 follow
bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing methods by Illumina ?
bcl2fastq2 --use-bases-mask sequencing illumina
updated 3.3 years ago by ▴ 320 • written 6.3 years ago by ▴ 240
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1
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3.3k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
4.5 years ago by 乙 ▴ 240
11
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18
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3.3k
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6 follow
Is there a tool to find the correct percentage of duplication levels in FastQ ?
sequencing fastq
updated 4.6 years ago by 148k • written 4.6 years ago by ▴ 240
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0
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3.3k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
4.6 years ago by 乙 ▴ 240
0
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1
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3.3k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
4.6 years ago by 乙 ▴ 240
0
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1
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3.3k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
4.6 years ago by 乙 ▴ 240
0
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1
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3.3k
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Comment: C: Is there a tool to find the correct percentage of duplication levels in FastQ ?
4.6 years ago by 乙 ▴ 240
0
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0
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1.1k
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Comment: C: Is it possible to get the Codons for an intron/splice mutation given the chromos
4.6 years ago by 乙 ▴ 240
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2
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1.1k
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Is it possible to get the Codons for an intron/splice mutation given the chromosome and position?
codons introns
4.6 years ago by 乙 ▴ 240
6
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5
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1.2k
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Is it possible to convert NC_ to NP_ for RefSeq ?
RefSeq
4.7 years ago by 乙 ▴ 240
0
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0
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1.2k
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Comment: C: Is it possible to get convert all NC_ to NP_ for RefSeq ?
4.7 years ago by 乙 ▴ 240
0
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2
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1.2k
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Comment: C: Is it possible to get convert all NC_ to NP_ for RefSeq ?
4.7 years ago by 乙 ▴ 240
1
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0
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2.1k
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What are the min/max of the MaxEntScan software ?
maxentscan
4.9 years ago by 乙 ▴ 240
1
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0
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877
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Any changes to the frequencies of gnomAD v2.1 liftover ?
gnomAD liftovert hg19 hg38
5.0 years ago by 乙 ▴ 240
4
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9
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2.5k
views
Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37 ?
Ensembl RefSeq transcripts genes
updated 5.0 years ago by 24k • written 5.0 years ago by ▴ 240
0
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1
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2.5k
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Comment: C: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
5.0 years ago by 乙 ▴ 240
0
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0
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2.5k
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Comment: C: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
5.0 years ago by 乙 ▴ 240
0
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1
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2.5k
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Comment: C: Is it possible to obtain all the RefSeq transcripts of Ensembl genes for GRCh37
5.0 years ago by 乙 ▴ 240
0
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0
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2.6k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
5.5 years ago by 乙 ▴ 240
0
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1
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2.6k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
5.5 years ago by 乙 ▴ 240
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0
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4.7k
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Comment: C: Should the expression data be centered before PCA?
5.5 years ago by 乙 ▴ 240
0
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1
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2.6k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
5.5 years ago by 乙 ▴ 240
1
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2
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2.6k
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Comment: C: Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
5.5 years ago by 乙 ▴ 240
3
votes
12
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2.6k
views
Is it possible to output uncompressed FastQ files with bcl2fastq2 ?
decompression bcl2fastq2 fastq bcl raw
5.5 years ago by 乙 ▴ 240
13
votes
16
replies
4.1k
views
8 follow
RNA-seq: is there a way to get the variability between biological replicates ?
RNA-Seq
updated 5.8 years ago by 8.3k • written 5.8 years ago by ▴ 240
0
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0
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4.1k
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Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
5.8 years ago by 乙 ▴ 240
0
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1
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4.1k
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Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
5.8 years ago by 乙 ▴ 240
0
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1
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4.1k
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Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
5.8 years ago by 乙 ▴ 240
1
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1
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4.1k
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Comment: C: RNA-seq: is there a way to get the variability between biological replicates ?
5.8 years ago by 乙 ▴ 240
0
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0
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1.8k
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Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.8 years ago by 乙 ▴ 240
15
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14
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1.8k
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RNA-seq: Is it worth to analyze case vs control separately to have a % similarity ?
RNA-Seq
updated 5.8 years ago by ★ 5.2k • written 5.8 years ago by ▴ 240
0
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0
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1.8k
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Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.8 years ago by 乙 ▴ 240
1
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0
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1.8k
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Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.8 years ago by 乙 ▴ 240
0
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1
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1.8k
views
Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.8 years ago by 乙 ▴ 240
0
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1
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1.8k
views
Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.8 years ago by 乙 ▴ 240
0
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1
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1.8k
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Comment: C: RNA-seq: Is it worth to analyze case vs control separately to have a % similarit
5.8 years ago by 乙 ▴ 240
2
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1
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5.4k
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Comment: C: What does CSQ means in a VCF file annotated by VEP ?
5.9 years ago by 乙 ▴ 240
15
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3
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5.4k
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What does CSQ means in a VCF file annotated by VEP ?
VCF CSQ
updated 5.9 years ago by 47k • written 5.9 years ago by ▴ 240
1
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1
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1.3k
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Comment: C: MySQL: Mapping GRCh38 coordinates to GRCh37 using ensembldb
6.0 years ago by 乙 ▴ 240
1
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3
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1.3k
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MySQL: Mapping GRCh38 coordinates to GRCh37 using ensembldb
ensembl MySQL Assembly mapping
updated 6.0 years ago by 165k • written 6.0 years ago by ▴ 240
0
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1
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21k
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Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
6.3 years ago by 乙 ▴ 240
5
votes
15
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9.1k
views
9 follow
Using Circos plot to visualize RNA-seq data
Circos RNA-Seq visualization
updated 6.5 years ago by ★ 3.4k • written 6.5 years ago by ▴ 240
1
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1
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9.1k
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Comment: C: Using Circos plot to visualize RNA-seq data
6.5 years ago by 乙 ▴ 240
0
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1
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9.1k
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Comment: C: Using Circos plot to visualize RNA-seq data
6.5 years ago by 乙 ▴ 240
0
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0
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9.1k
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Comment: C: Using Circos plot to visualize RNA-seq data
6.5 years ago by 乙 ▴ 240
4
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7
replies
3.1k
views
HTSeq-count [Python] is not properly counting reads like Genomic Alignments [R] ?
RNA-Seq HTSeq-count GenomicAlignments
6.6 years ago by 乙 ▴ 240
0
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1
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3.1k
views
Comment: C: HTSeq-count [Python] is not properly counting reads like Genomic Alignments [R]
6.6 years ago by 乙 ▴ 240
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