User: Sreeraj Thamban
Sreeraj Thamban • 140
- Reputation:
- 140
- Status:
- Trusted
- Location:
- Indian Institute of Science Education and Research
- Last seen:
- 1 year, 3 months ago
- Joined:
- 2 years, 2 months ago
- Email:
- s***************@iisertvm.ac.in
Posts by Sreeraj Thamban
<prev
• 43 results •
page 1 of 5 •
next >
0
votes
0
answers
447
views
0
answers
... Hello Biostars, Is it possible to plot all genes belonging to one particular pattern in EBSeq-HMM results as a line graph? ...
written 20 months ago by
Sreeraj Thamban • 140
1
vote
1
answer
500
views
1
answer
... Hello Biostars,
Is it possible to import Kallisto output to BaySeq? Which is the best way to do it?
Thanks in advance ...
written 20 months ago by
Sreeraj Thamban • 140
• updated
20 months ago by
Kevin Blighe ♦ 45k
1
vote
1
answer
513
views
1
answer
... Hi everyone recently I came across this [paper][1] where they used Bayesian Estimation of Temporal Regulation to analyze their time course RNASeq data. Can anyone suggest a good package in R or other software to do the same?
[1]: https://www.ncbi.nlm.nih.gov/pubmed/28904073 ...
written 20 months ago by
Sreeraj Thamban • 140
• updated
20 months ago by
andrew.j.skelton73 ♦ 5.8k
0
votes
1
answer
1.2k
views
1
answers
... Hi Vijay, Did you try using Biomart? it has some useful function to fetch gene symbols. ...
written 20 months ago by
Sreeraj Thamban • 140
0
votes
1
answer
1.2k
views
1
answers
Comment:
C: Time course experiment in RNASeq
... Hello Ron, I checked the EBseq package, but I am bit confused about interpretation the 'pattern' which is given by EBseq. It gives a list of patterns but what exactly those pattern means? ...
written 20 months ago by
Sreeraj Thamban • 140
2
votes
1
answer
1.2k
views
1
answer
... Hello Biostars,
I have a time course experiment RNASeq data,one strain of bacteria and three time points 0h,1h,and3h. Which is the best method to identify the expression pattern of genes over time using this data? I want to generate a image like [this][1]
[1]: https://ibb.co/fKqasb ...
written 20 months ago by
Sreeraj Thamban • 140
• updated
20 months ago by
EagleEye ♦ 6.4k
0
votes
2
answers
1.1k
views
2
answers
... Hi Coster, I have a group of genes which are involved in a common pathway. I wanted to plot the overall trend of their expression pattern between treated and untreated samples. ...
written 21 months ago by
Sreeraj Thamban • 140
4
votes
2
answers
1.1k
views
8 follow
2
answers
... Helloo biostars,
I want visualise/plot the expression pattern of a set genes from my RNASeq data. Which are the best R packages or other softawares to do so? I came accross maSigPro and impulseDE but was not impressed by them.
Thanks in advance ...
written 21 months ago by
Sreeraj Thamban • 140
• updated
21 months ago by
Hussain Ather • 940
1
vote
1
answer
699
views
1
answers
... If you have basic knowledge in R you can use [ggplot2][1] to make good publication quality plots.
Here is an excellent [guide][2] for ggplot2.
HTH
[1]: http://ggplot2.org/
[2]: https://www.amazon.com/Graphics-Cookbook-Practical-Recipes-Visualizing/dp/1449316956 ...
written 21 months ago by
Sreeraj Thamban • 140
0
votes
1
answer
1.2k
views
1
answers
... Hello Coster, Only the sequencing performed differently,library prep was same for both. ...
written 21 months ago by
Sreeraj Thamban • 140
Latest awards to Sreeraj Thamban
Popular Question
20 months ago,
created a question with more than 1,000 views.
For Gene Set Enrichment Analysis after DESeq2
Scholar
21 months ago,
created an answer that has been accepted.
For A: How I can produce graphs like this
Supporter
21 months ago,
voted at least 25 times.
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1260 users visited in the last hour