User: brianj.park

brianj.park • 50

Reputation:: 50
Status:: Trusted
Location:: Montréal, Canada
Last seen:: 17 hours ago
Joined:: 3 years, 8 months ago
Email:: b**********@mail.utoronto.ca

Posts by brianj.park

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Answer: A: How to correctly generate alignment Stat in RNA-Seq

... Check [RSeQC:][1] in particular `bam_stat.py` [1]: http://rseqc.sourceforge.net/#bam-stat-py ...

written 11 months ago by brianj.park • 50

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Answer: A: Novel miRNA identification

... You can also give [miRge2.0][1] a try. [1]: https://github.com/mhalushka/miRge ...

written 11 months ago by brianj.park • 50

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Answer: A: Are there good reference for miRNA microRNA pathway analysis in R following edge

... Hi, Late reply but for anyone looking for resources: miRNAtap (http://bioconductor.org/packages/release/bioc/html/miRNAtap.html) from Bioconductor is a good place to look for enrichment analysis after differential expression for miRNAs. It takes miRNA input and gives you a consolidated data frame ...

written 22 months ago by brianj.park • 50

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Scholar 7 months ago, created an answer that has been accepted. For A: Comparing gene ontology for two lists of genes