User: Inquisitive8995

gravatar for Inquisitive8995
Reputation:
130
Status:
Trusted
Location:
Last seen:
2 weeks ago
Joined:
2 years, 2 months ago
Email:
a*********@gmail.com

Posts by Inquisitive8995

<prev • 80 results • page 1 of 8 • next >
0
votes
2
answers
177
views
2
answers
Comment: C: How to find pattern matching over range of columns but not present in other colu
... Thank you very much @SMK ...
written 15 days ago by Inquisitive8995130
0
votes
2
answers
177
views
2
answers
Comment: C: How to find pattern matching over range of columns but not present in other colu
... They not equal but I know the number before starting ...
written 15 days ago by Inquisitive8995130
12
votes
2
answers
177
views
6 follow
2
answers
How to find pattern matching over range of columns but not present in other columns?
... Hello, I have a huge file with 0s and 1s. The position where there is a snp is given 1 and others are 0. Also, I have different populations in the same tsv file. My goal is to find signature SNPs present in a particular population (say population 1 is from column1 to column5). So I need the posit ...
R snp shell written 15 days ago by Inquisitive8995130 • updated 15 days ago by SMK1.8k
1
vote
1
answer
176
views
1
answers
Answer: C: Help in Gwas analysis
... Hi, You can exclude samples using plink directly by mentioning the ids. Refer to this link [https://www.cog-genomics.org/plink/1.9/filter]. This way the samples will be removed by both .ped & .map files. .bed file cannot be read as it is a binary file. ...
written 10 weeks ago by Inquisitive8995130
0
votes
1
answer
202
views
1
answers
Comment: C: Create coloured plot based on 1s and 0s
... Thank you very much for your reply. The ggplot works perfectly. ...
written 3 months ago by Inquisitive8995130
0
votes
1
answer
202
views
1
answers
Comment: C: Create coloured plot based on 1s and 0s
... I have been trying different plot and methods with my data already. As mentioned, I have a binary file with 0s and 1s. I tried using this file as a dataframe and as a matrix. When I used my file as a matrix, I used the below command w.r.t the link provided by you; > matrix1 <- matrix(Y, nro ...
written 3 months ago by Inquisitive8995130
0
votes
1
answer
202
views
1
answers
Comment: C: Create coloured plot based on 1s and 0s
... Thanks for your reply. But this doesn't work for my pre-existing matrix ...
written 3 months ago by Inquisitive8995130
4
votes
1
answer
202
views
1
answer
Create a plot based on binary input of 1s and 0s.
... Hello, I have a tsv file with 1s and 0s. It has about 20 rows and 100 columns. I have created a dataframe. Now, I want to create a plot/graph which can show a particular colour/pattern for all 1s and another for the 0s with rownames in x-axis and column names along the y-axis. Is this possible in * ...
R script plot written 3 months ago by Inquisitive8995130 • updated 3 months ago by zx87547.8k
0
votes
0
answers
183
views
0
answers
Comment: C: Bedtools intersect error
... It is mentioned in one of the posts that `<*>` refers to alternate allele or homozygous reference sites. https://www.biostars.org/p/279971/ ...
written 3 months ago by Inquisitive8995130
0
votes
0
answers
183
views
0
answers
Comment: C: Bedtools intersect error
... Yes, I have rechecked all the file formats from the original sam file to the final input vcf file. Those seem to be fine ...
written 3 months ago by Inquisitive8995130

Latest awards to Inquisitive8995

Student 15 days ago, asked a question with at least 3 up-votes. For How to find pattern matching over range of columns but not present in other columns?
Popular Question 10 weeks ago, created a question with more than 1,000 views. For Script to match contents of 2 files using R
Popular Question 3 months ago, created a question with more than 1,000 views. For Script to match contents of 2 files using R
Popular Question 4 months ago, created a question with more than 1,000 views. For bcftools compressing and indexing vcf files
Popular Question 4 months ago, created a question with more than 1,000 views. For bcftools compressing and indexing vcf files
Great Question 5 months ago, created a question with more than 5,000 views. For Delete columns with specific headers in a dataframe in R
Popular Question 5 months ago, created a question with more than 1,000 views. For bcftools compressing and indexing vcf files
Supporter 10 months ago, voted at least 25 times.
Popular Question 11 months ago, created a question with more than 1,000 views. For Delete columns with specific headers in a dataframe in R
Popular Question 13 months ago, created a question with more than 1,000 views. For Delete columns with specific headers in a dataframe in R

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1614 users visited in the last hour