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How to generate a .raw file from vcf in plink
plink vcf
updated 21 months ago by 44k • written 2.5 years ago by ▴ 80
1
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1
reply
696
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Interpretation of results obtained in GWAS analysis using MLMM
snp-effect mlmm gwas
updated 5 months ago by 44k • written 2.1 years ago by ▴ 80
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0
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463
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Survival analysis with RNA-Seq and several cancer subtypes
survival expression rna-seq
2.2 years ago by antmantras ▴ 80
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0
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2.0k
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Comment: Comment: Phenotype data normalization prior to GWAS
2.2 years ago by antmantras ▴ 80
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2
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2.0k
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Phenotype data normalization prior to GWAS
normalization gwas phenotype
2.2 years ago by antmantras ▴ 80
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0
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1.9k
views
Comment: Comment: Question about edgeR GLM funcionality
2.2 years ago by antmantras ▴ 80
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1
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1.9k
views
Comment: Comment: Question about edgeR GLM funcionality
2.2 years ago by antmantras ▴ 80
2
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4
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1.9k
views
Question about edgeR GLM funcionality
edger dge glm rna-seq
2.2 years ago by antmantras ▴ 80
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1
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1.0k
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Comment: Comment: GO analysis where I can set by own set of genes to search against
2.3 years ago by antmantras ▴ 80
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0
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930
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Answer: Answer: Microarray DEG analysis visualisation
2.3 years ago by antmantras ▴ 80
1
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1
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2.0k
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Comment: Comment: Fasta headers column spilt or selection
2.3 years ago by antmantras ▴ 80
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2
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2.0k
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Answer: Answer: Fasta headers column spilt or selection
2.3 years ago by antmantras ▴ 80
1
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1
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3.2k
views
Comment: Comment: BWA index - What will be produced
2.5 years ago by antmantras ▴ 80
2
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1
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3.2k
views
Answer: Answer: BWA index - What will be produced
2.5 years ago by antmantras ▴ 80
0
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0
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553
views
Does read group id need to be unique between multiple bam files?
bam variant-calling snp readgroup
2.5 years ago by antmantras ▴ 80
0
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1
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790
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Answer: Answer: Bowtie2 penality scoring
2.5 years ago by antmantras ▴ 80
0
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0
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1.4k
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Comment: Comment: Expected runtimes for GATK variant calling?
2.5 years ago by antmantras ▴ 80
0
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2
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1.4k
views
Expected runtimes for GATK variant calling?
snp variant calling gatk
2.5 years ago by antmantras ▴ 80
0
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1
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760
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Comment: Comment: Strange alignments results
2.6 years ago by antmantras ▴ 80
5
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3
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761
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Strange alignments results
coverage mem bwa bowtie2 alignment
updated 2.6 years ago by 86k • written 2.6 years ago by ▴ 80
0
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0
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543
views
Combining own and public samples from different sequencing strategies to perform GWAS
gwas gbs wgs
2.6 years ago by antmantras ▴ 80
0
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0
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519
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Model/Variable selection in cox regression
survival-analysis gene-expression model-selection cox-regression
2.8 years ago by antmantras ▴ 80
0
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1
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2.2k
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Comment: Comment: Hardware requirements for de novo assembly of a small plant genome (<1 Gb) with
3.0 years ago by antmantras ▴ 80
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0
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2.2k
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Comment: Comment: Hardware requirements for de novo assembly of a small plant genome (<1 Gb) with
3.0 years ago by antmantras ▴ 80
3
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5
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2.2k
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Hardware requirements for de novo assembly of a small plant genome (<1 Gb) with PacBio HiFi
sequencing genome assembly plant de-novo
updated 3.0 years ago by 7.0k • written 3.0 years ago by ▴ 80
0
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0
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467
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Survival analysis of several genes with more than 3 levels
tcga cancer survival
3.0 years ago by antmantras ▴ 80
0
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0
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1.7k
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Comment: Comment: Batch effects and differential expression analysis on TCGA data for cancer subty
3.7 years ago by antmantras ▴ 80
0
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2
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1.7k
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Batch effects and differential expression analysis on TCGA data for cancer subtypes
RNA-Seq TCGA batch
3.7 years ago by antmantras ▴ 80
0
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0
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705
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CPM or TPM values as discretization method input
RNA-Seq discretization TPM CPM
3.8 years ago by antmantras ▴ 80
0
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1
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3.3k
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Comment: C: How to retrieve paired samples of RNASeq data from TCGA? (Normal vs Tumor)
6.5 years ago by antmantras ▴ 80
3
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3
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3.3k
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How to retrieve paired samples of RNASeq data from TCGA? (Normal vs Tumor)
rna-seq tcga cancer
updated 6.5 years ago by 88k • written 6.5 years ago by ▴ 80
0
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0
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1.8k
views
Minfi bumphunter -value column
R minfi bumphunter
7.7 years ago by antmantras ▴ 80
32 results • Page 1 of 1
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