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265
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Comment:
Comment: Automate the Splitting of a VCF File by Sample (bcftools)
1 day ago by
cfos4698
▴ 840
1
vote
0
replies
599
views
Answer:
Answer: What is the fastest nucleotide sequence alignment search tool for 100mer queries
19 days ago by
cfos4698
▴ 840
0
votes
0
replies
250
views
Answer:
Answer: Can vg stats -a be used on a bam file?
4 weeks ago by
cfos4698
▴ 840
1
vote
1
reply
615
views
Answer:
Answer: Found some plasmids in my sequence. IS there any tool or process by which i can
4 weeks ago by
cfos4698
▴ 840
0
votes
1
reply
765
views
Comment:
Comment: Converting string to numerical in bcftools
4 weeks ago by
cfos4698
▴ 840
0
votes
0
replies
210
views
Comment:
Comment: WGCNA Analysis - blockwiseModules data processing
5 weeks ago by
cfos4698
▴ 840
0
votes
1
reply
980
views
Comment:
Comment: Cannot process all the reads in a fast5 file?
5 weeks ago by
cfos4698
▴ 840
0
votes
1
reply
627
views
Answer:
Answer: Align raw Nanopore reads (amplicon, long PCR)
6 weeks ago by
cfos4698
▴ 840
1
vote
0
replies
228
views
Answer:
Answer: Can you convert ASCII text to fastq?
6 weeks ago by
cfos4698
▴ 840
0
votes
0
replies
211
views
Answer:
Answer: Measuring Evolutionary Distance Between Species from Chronogram
9 weeks ago by
cfos4698
▴ 840
0
votes
1
reply
349
views
Answer:
Answer: Extract Divergence Times and Corresponding Node Numbers from a Time Tree
9 weeks ago by
cfos4698
▴ 840
1
vote
1
reply
1.2k
views
Clarification for bcftools consensus
bcftools
vcf
9 weeks ago by
cfos4698
▴ 840
1
vote
0
replies
1.2k
views
Answer:
Answer: Clarification for bcftools consensus
9 weeks ago by
cfos4698
▴ 840
2
votes
1
reply
274
views
Answer:
Answer: Phylogenetic tree visualization
9 weeks ago by
cfos4698
▴ 840
0
votes
1
reply
765
views
Comment:
Comment: Converting string to numerical in bcftools
9 weeks ago by
cfos4698
▴ 840
0
votes
1
reply
765
views
Answer:
Answer: Converting string to numerical in bcftools
11 weeks ago by
cfos4698
▴ 840
0
votes
1
reply
28k
views
Comment:
Comment: Generating consensus sequence from bam file
3 months ago by
cfos4698
▴ 840
1
vote
1
reply
1.2k
views
Answer:
Answer: Best tool for trimming and filtering nanopore direct RNA sequencing.
4 months ago by
cfos4698
▴ 840
1
vote
1
reply
988
views
Comment:
Comment: Help with error in snpEff command
5 months ago by
cfos4698
▴ 840
1
vote
1
reply
988
views
Answer:
Answer: Help with error in snpEff command
5 months ago by
cfos4698
▴ 840
0
votes
0
replies
987
views
Answer:
Answer: Apple Silicon M1 for sequencing and base calling in MinION Mk1B Oxford Nanopore
5 months ago by
cfos4698
▴ 840
0
votes
1
reply
600
views
Answer:
Answer: Help with my fasta filter python scrips
5 months ago by
cfos4698
▴ 840
0
votes
0
replies
1.3k
views
Comment:
Comment: bcftools isec output for multiple vcf files interpretations
5 months ago by
cfos4698
▴ 840
1
vote
1
reply
639
views
Answer:
Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an
6 months ago by
cfos4698
▴ 840
2
votes
0
replies
1.5k
views
Answer:
Answer: Snakemake vs Nextflow Upcoming bioinformatics Project
6 months ago by
cfos4698
▴ 840
1
vote
0
replies
1.1k
views
Comment:
Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI
6 months ago by
cfos4698
▴ 840
1
vote
0
replies
478
views
Answer:
Answer: Filtering VCF by specific tag in INFO field
6 months ago by
cfos4698
▴ 840
0
votes
1
reply
730
views
Comment:
Comment: Can not get bcftools norm to join biallelics into a multiallelic.
6 months ago by
cfos4698
▴ 840
3
votes
3
replies
549
views
Filtering of tricky overlapping sites in VCF
vcf
bcftools
6 months ago by
cfos4698
▴ 840
0
votes
0
replies
549
views
Answer:
Answer: Filtering of tricky overlapping sites in VCF
6 months ago by
cfos4698
▴ 840
0
votes
0
replies
549
views
Comment:
Comment: Filtering of tricky overlapping sites in VCF
6 months ago by
cfos4698
▴ 840
4
votes
0
replies
573
views
Answer:
Answer: How to extract FASTA headers in R
6 months ago by
cfos4698
▴ 840
2
votes
1
reply
1.8k
views
Comment:
Comment: Conda is installing older version of Spades even though latest version is there
7 months ago by
cfos4698
▴ 840
0
votes
1
reply
2.8k
views
Comment:
Comment: conda create env using .yml file leads to dependency conflicts
7 months ago by
cfos4698
▴ 840
0
votes
0
replies
2.8k
views
Comment:
Comment: conda create env using .yml file leads to dependency conflicts
7 months ago by
cfos4698
▴ 840
1
vote
1
reply
2.8k
views
Comment:
Comment: conda create env using .yml file leads to dependency conflicts
7 months ago by
cfos4698
▴ 840
1
vote
2
replies
2.8k
views
Answer:
Answer: conda create env using .yml file leads to dependency conflicts
7 months ago by
cfos4698
▴ 840
1
vote
0
replies
938
views
Comment:
Comment: Split trio vcf file
7 months ago by
cfos4698
▴ 840
0
votes
1
reply
938
views
Answer:
Answer: Split trio vcf file
7 months ago by
cfos4698
▴ 840
3
votes
1
reply
1.3k
views
Answer:
Answer: bcftools isec output for multiple vcf files interpretations
7 months ago by
cfos4698
▴ 840
0
votes
0
replies
438
views
Answer:
Answer: Issues with clusterProfiler and WikiPathways
7 months ago by
cfos4698
▴ 840
0
votes
1
reply
1.3k
views
Comment:
Comment: PROKKA.gff file is not compatible with featureCounts
7 months ago by
cfos4698
▴ 840
1
vote
0
replies
871
views
Answer:
Answer: command line - how to change name of multiple files at the same time
7 months ago by
cfos4698
▴ 840
0
votes
0
replies
342
views
Answer:
Answer: Extract species-specific SNPs from VCF files
7 months ago by
cfos4698
▴ 840
1
vote
0
replies
886
views
Comment:
Comment: Issues With Using Singularity In Order To Run Software "quested access to the re
7 months ago by
cfos4698
▴ 840
1
vote
0
replies
1.2k
views
Comment:
Comment: Error in reference fasta file when indexing with samtools
8 months ago by
cfos4698
▴ 840
2
votes
1
reply
1.2k
views
Comment:
Comment: Error in reference fasta file when indexing with samtools
8 months ago by
cfos4698
▴ 840
0
votes
0
replies
777
views
Comment:
Comment: Not returning any alleles when using bcftools view -q
15 months ago by
cfos4698
▴ 840
0
votes
1
reply
777
views
Answer:
Answer: Not returning any alleles when using bcftools view -q
16 months ago by
cfos4698
▴ 840
2
votes
1
reply
1.1k
views
Answer:
Answer: Errors loading in a treefile using ETE3
18 months ago by
cfos4698
▴ 840
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