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Comment: Comment: Automate the Splitting of a VCF File by Sample (bcftools)
1 day ago by cfos4698 ▴ 840
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599
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Answer: Answer: What is the fastest nucleotide sequence alignment search tool for 100mer queries
19 days ago by cfos4698 ▴ 840
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250
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Answer: Answer: Can vg stats -a be used on a bam file?
4 weeks ago by cfos4698 ▴ 840
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615
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Answer: Answer: Found some plasmids in my sequence. IS there any tool or process by which i can
4 weeks ago by cfos4698 ▴ 840
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765
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Comment: Comment: Converting string to numerical in bcftools
4 weeks ago by cfos4698 ▴ 840
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210
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Comment: Comment: WGCNA Analysis - blockwiseModules data processing
5 weeks ago by cfos4698 ▴ 840
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980
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Comment: Comment: Cannot process all the reads in a fast5 file?
5 weeks ago by cfos4698 ▴ 840
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627
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Answer: Answer: Align raw Nanopore reads (amplicon, long PCR)
6 weeks ago by cfos4698 ▴ 840
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228
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Answer: Answer: Can you convert ASCII text to fastq?
6 weeks ago by cfos4698 ▴ 840
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0
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211
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Answer: Answer: Measuring Evolutionary Distance Between Species from Chronogram
9 weeks ago by cfos4698 ▴ 840
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349
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Answer: Answer: Extract Divergence Times and Corresponding Node Numbers from a Time Tree
9 weeks ago by cfos4698 ▴ 840
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1.2k
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Clarification for bcftools consensus
bcftools vcf
9 weeks ago by cfos4698 ▴ 840
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1.2k
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Answer: Answer: Clarification for bcftools consensus
9 weeks ago by cfos4698 ▴ 840
2
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1
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274
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Answer: Answer: Phylogenetic tree visualization
9 weeks ago by cfos4698 ▴ 840
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765
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Comment: Comment: Converting string to numerical in bcftools
9 weeks ago by cfos4698 ▴ 840
0
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1
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765
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Answer: Answer: Converting string to numerical in bcftools
11 weeks ago by cfos4698 ▴ 840
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1
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28k
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Comment: Comment: Generating consensus sequence from bam file
3 months ago by cfos4698 ▴ 840
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1
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1.2k
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Answer: Answer: Best tool for trimming and filtering nanopore direct RNA sequencing.
4 months ago by cfos4698 ▴ 840
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1
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988
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Comment: Comment: Help with error in snpEff command
5 months ago by cfos4698 ▴ 840
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1
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988
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Answer: Answer: Help with error in snpEff command
5 months ago by cfos4698 ▴ 840
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0
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987
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Answer: Answer: Apple Silicon M1 for sequencing and base calling in MinION Mk1B Oxford Nanopore
5 months ago by cfos4698 ▴ 840
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1
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600
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Answer: Answer: Help with my fasta filter python scrips
5 months ago by cfos4698 ▴ 840
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0
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1.3k
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Comment: Comment: bcftools isec output for multiple vcf files interpretations
5 months ago by cfos4698 ▴ 840
1
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1
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639
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Answer: Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an
6 months ago by cfos4698 ▴ 840
2
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0
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1.5k
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Answer: Answer: Snakemake vs Nextflow Upcoming bioinformatics Project
6 months ago by cfos4698 ▴ 840
1
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0
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1.1k
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Comment: Comment: Most efficient way to run Diamond against a very very large database (i.e., NCBI
6 months ago by cfos4698 ▴ 840
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0
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478
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Answer: Answer: Filtering VCF by specific tag in INFO field
6 months ago by cfos4698 ▴ 840
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1
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730
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Comment: Comment: Can not get bcftools norm to join biallelics into a multiallelic.
6 months ago by cfos4698 ▴ 840
3
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3
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549
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Filtering of tricky overlapping sites in VCF
vcf bcftools
6 months ago by cfos4698 ▴ 840
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0
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549
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Answer: Answer: Filtering of tricky overlapping sites in VCF
6 months ago by cfos4698 ▴ 840
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0
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549
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Comment: Comment: Filtering of tricky overlapping sites in VCF
6 months ago by cfos4698 ▴ 840
4
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0
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573
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Answer: Answer: How to extract FASTA headers in R
6 months ago by cfos4698 ▴ 840
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1
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1.8k
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Comment: Comment: Conda is installing older version of Spades even though latest version is there
7 months ago by cfos4698 ▴ 840
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2.8k
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Comment: Comment: conda create env using .yml file leads to dependency conflicts
7 months ago by cfos4698 ▴ 840
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2.8k
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Comment: Comment: conda create env using .yml file leads to dependency conflicts
7 months ago by cfos4698 ▴ 840
1
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1
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2.8k
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Comment: Comment: conda create env using .yml file leads to dependency conflicts
7 months ago by cfos4698 ▴ 840
1
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2
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2.8k
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Answer: Answer: conda create env using .yml file leads to dependency conflicts
7 months ago by cfos4698 ▴ 840
1
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0
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938
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Comment: Comment: Split trio vcf file
7 months ago by cfos4698 ▴ 840
0
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1
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938
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Answer: Answer: Split trio vcf file
7 months ago by cfos4698 ▴ 840
3
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1
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1.3k
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Answer: Answer: bcftools isec output for multiple vcf files interpretations
7 months ago by cfos4698 ▴ 840
0
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0
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438
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Answer: Answer: Issues with clusterProfiler and WikiPathways
7 months ago by cfos4698 ▴ 840
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1
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1.3k
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Comment: Comment: PROKKA.gff file is not compatible with featureCounts
7 months ago by cfos4698 ▴ 840
1
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0
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871
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Answer: Answer: command line - how to change name of multiple files at the same time
7 months ago by cfos4698 ▴ 840
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0
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342
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Answer: Answer: Extract species-specific SNPs from VCF files
7 months ago by cfos4698 ▴ 840
1
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0
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886
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Comment: Comment: Issues With Using Singularity In Order To Run Software "quested access to the re
7 months ago by cfos4698 ▴ 840
1
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0
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1.2k
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Comment: Comment: Error in reference fasta file when indexing with samtools
8 months ago by cfos4698 ▴ 840
2
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1
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1.2k
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Comment: Comment: Error in reference fasta file when indexing with samtools
8 months ago by cfos4698 ▴ 840
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0
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777
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Comment: Comment: Not returning any alleles when using bcftools view -q
15 months ago by cfos4698 ▴ 840
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1
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777
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Answer: Answer: Not returning any alleles when using bcftools view -q
16 months ago by cfos4698 ▴ 840
2
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1
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1.1k
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Answer: Answer: Errors loading in a treefile using ETE3
18 months ago by cfos4698 ▴ 840
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