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Answer: Answer: Problem with Newick format - ggtree in R
8 weeks ago by cfos4698 ★ 1.1k
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497
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Answer: Answer: snippy error
10 weeks ago by cfos4698 ★ 1.1k
2
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2
replies
540
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Answer: Answer: RNA seq for non-model species
11 weeks ago by cfos4698 ★ 1.1k
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653
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Answer: Answer: Trimming nanopore reads
11 weeks ago by cfos4698 ★ 1.1k
2
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0
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559
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Answer: Answer: Importing modules based on python in bash script wont work
4 months ago by cfos4698 ★ 1.1k
0
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1
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368
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Answer: Answer: What is the best way to identify which group of genes is more highly expressed?
4 months ago by cfos4698 ★ 1.1k
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462
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Answer: Answer: Kaiju database download
5 months ago by cfos4698 ★ 1.1k
0
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0
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397
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Answer: Answer: Comparative transcriptomics between species
5 months ago by cfos4698 ★ 1.1k
2
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0
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5.6k
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Answer: Answer: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
6 months ago by cfos4698 ★ 1.1k
1
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0
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942
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Answer: Answer: What is the fastest nucleotide sequence alignment search tool for 100mer queries
7 months ago by cfos4698 ★ 1.1k
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0
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512
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Answer: Answer: Can vg stats -a be used on a bam file?
7 months ago by cfos4698 ★ 1.1k
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1
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912
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Answer: Answer: Found some plasmids in my sequence. IS there any tool or process by which i can
7 months ago by cfos4698 ★ 1.1k
0
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1
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932
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Answer: Answer: Align raw Nanopore reads (amplicon, long PCR)
8 months ago by cfos4698 ★ 1.1k
1
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0
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573
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Answer: Answer: Can you convert ASCII text to fastq?
8 months ago by cfos4698 ★ 1.1k
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0
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376
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Answer: Answer: Measuring Evolutionary Distance Between Species from Chronogram
8 months ago by cfos4698 ★ 1.1k
0
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1
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788
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Answer: Answer: Extract Divergence Times and Corresponding Node Numbers from a Time Tree
8 months ago by cfos4698 ★ 1.1k
1
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0
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1.4k
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Answer: Answer: Clarification for bcftools consensus
8 months ago by cfos4698 ★ 1.1k
2
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1
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508
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Answer: Answer: Phylogenetic tree visualization
9 months ago by cfos4698 ★ 1.1k
0
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1
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1.4k
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Answer: Answer: Converting string to numerical in bcftools
9 months ago by cfos4698 ★ 1.1k
1
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1
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3.4k
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Answer: Answer: Best tool for trimming and filtering nanopore direct RNA sequencing.
11 months ago by cfos4698 ★ 1.1k
1
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1
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1.6k
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Answer: Answer: Help with error in snpEff command
11 months ago by cfos4698 ★ 1.1k
0
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0
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2.2k
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Answer: Answer: Apple Silicon M1 for sequencing and base calling in MinION Mk1B Oxford Nanopore
11 months ago by cfos4698 ★ 1.1k
0
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1
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903
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Answer: Answer: Help with my fasta filter python scrips
12 months ago by cfos4698 ★ 1.1k
1
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1
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1.0k
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Answer: Answer: How can I use bcftools mpileup or an alternative to find ALL variants without an
12 months ago by cfos4698 ★ 1.1k
2
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0
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2.4k
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Answer: Answer: Snakemake vs Nextflow Upcoming bioinformatics Project
12 months ago by cfos4698 ★ 1.1k
1
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0
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773
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Answer: Answer: Filtering VCF by specific tag in INFO field
13 months ago by cfos4698 ★ 1.1k
0
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0
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767
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Answer: Answer: Filtering of tricky overlapping sites in VCF
13 months ago by cfos4698 ★ 1.1k
6
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0
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873
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Answer: Answer: How to extract FASTA headers in R
13 months ago by cfos4698 ★ 1.1k
1
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2
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4.8k
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Answer: Answer: conda create env using .yml file leads to dependency conflicts
14 months ago by cfos4698 ★ 1.1k
0
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1
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1.2k
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Answer: Answer: Split trio vcf file
14 months ago by cfos4698 ★ 1.1k
4
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1
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2.4k
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Answer: Answer: bcftools isec output for multiple vcf files interpretations
14 months ago by cfos4698 ★ 1.1k
0
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0
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618
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Answer: Answer: Issues with clusterProfiler and WikiPathways
14 months ago by cfos4698 ★ 1.1k
1
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0
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1.2k
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Answer: Answer: command line - how to change name of multiple files at the same time
14 months ago by cfos4698 ★ 1.1k
0
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0
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478
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Answer: Answer: Extract species-specific SNPs from VCF files
14 months ago by cfos4698 ★ 1.1k
0
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1
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1.1k
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Answer: Answer: Not returning any alleles when using bcftools view -q
22 months ago by cfos4698 ★ 1.1k
2
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1
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1.4k
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Answer: Answer: Errors loading in a treefile using ETE3
2.1 years ago by cfos4698 ★ 1.1k
0
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0
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1.3k
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Answer: Answer: How can I trim the primer and mask it with the original primer sequences?
2.2 years ago by cfos4698 ★ 1.1k
0
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0
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719
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Answer: Answer: subset vcf to keep only samples heterozygous or homozygous for the alternate all
2.2 years ago by cfos4698 ★ 1.1k
2
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0
replies
945
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Answer: Answer: Which is the file containing genome assembly?
2.2 years ago by cfos4698 ★ 1.1k
0
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0
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1.9k
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Answer: Answer: Command-line alternative to Geneious assemble for Sanger sequencing data
2.3 years ago by cfos4698 ★ 1.1k
0
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1
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826
views
Answer: Answer: SnpEff does not create htmlStats
2.4 years ago by cfos4698 ★ 1.1k
4
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0
replies
1.8k
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Answer: Answer: a question about using Enrichr
2.4 years ago by cfos4698 ★ 1.1k
0
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0
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736
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Answer: Answer: help with filtering sequences to make a phylogenetic tree
2.4 years ago by cfos4698 ★ 1.1k
2
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1
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1.0k
views
Answer: Answer: Spike protein sequences for COVID-19 variants
2.4 years ago by cfos4698 ★ 1.1k
3
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1
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2.7k
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Answer: Answer: Bam file depth of coverage and statstics
2.5 years ago by cfos4698 ★ 1.1k
1
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1
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1.7k
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Answer: Answer: GO enrichment analysis with clusterProfiler
2.5 years ago by cfos4698 ★ 1.1k
2
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1
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2.0k
views
Answer: Answer: Noob: Help writing this shell for salmon quantification?
2.5 years ago by cfos4698 ★ 1.1k
1
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1
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2.0k
views
Answer: Answer: kegg IDs to pathways in R
2.5 years ago by cfos4698 ★ 1.1k
1
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1
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1.8k
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Answer: Answer: How to run MLST with multiple fastq files
2.5 years ago by cfos4698 ★ 1.1k
0
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0
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1.2k
views
Answer: Answer: Protein Sequences MSA vs. BLASTp
2.5 years ago by cfos4698 ★ 1.1k
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