User: sbrown669

gravatar for sbrown669
sbrown66920
Reputation:
20
Status:
New User
Location:
Last seen:
1 month, 1 week ago
Joined:
2 years, 8 months ago
Email:
a*******@mail.bbk.ac.uk

Posts by sbrown669

<prev • 4 results • page 1 of 1 • next >
3
votes
1
answer
577
views
1
answer
Using SVA to correct for covariates in RNA-seq data
... I am working with RNA-seq data, and I need to correct for covariates. To do this, I want to use the Bioconductor package SVA. I want to produce a 'corrected dataset' and then use this for further analyses - to perform pairwise Pearson correlations and generate heat maps to visualise co-expression. ...
R sva corrections covariates rna-seq written 10 months ago by sbrown66920
3
votes
1
answer
1.3k
views
1
answer
What are the major differences in the computation of DE genes between deseq2 and limma?
... Other than Limma being designed for microarray analysis, I'm not sure I have grasped the major differences in how they compute differential expression. Also, how does this manifest in the gene calls? Is one more stringent? ...
R deseq2 limma differential expression rna-seq written 2.4 years ago by sbrown66920 • updated 2.4 years ago by Kevin Blighe53k
3
votes
2
answers
2.1k
views
2
answers
PANTHER gene ontology - is the bonferroni correction important?
... This is what it says on PANTHER with regards to the test: > The expression data analysis statistics now include a Bonferroni > correction for multiple testing. The Bonferroni correction is > important because we are performing many statistical tests (one for > each pathway, or each onto ...
panther ontology rna-seq statistics written 2.5 years ago by sbrown66920 • updated 2.5 years ago by mforde841.2k
4
votes
2
answers
3.3k
views
5 follow
2
answers
cutadapt loop and paired-end reads
... My aim is to create a bash loop over my fastq files that are in a directory like so: https://ibb.co/cMvx7a whereby, paired read files are organised in the form: 1 1 2 2 3 3 etc.. I don't know a way of dealing with these paired files within the cutadapt loop Something along these lines is wh ...
paired-end cutadapt loop rna-seq bash written 2.7 years ago by sbrown66920 • updated 23 months ago by montoya.oscar50

Latest awards to sbrown669

Popular Question 2.4 years ago, created a question with more than 1,000 views. For PANTHER gene ontology - is the bonferroni correction important?
Popular Question 2.4 years ago, created a question with more than 1,000 views. For cutadapt loop and paired-end reads

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1719 users visited in the last hour