User: Hughie

gravatar for Hughie
Hughie20
Reputation:
20
Status:
New User
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Last seen:
1 month, 3 weeks ago
Joined:
2 years, 6 months ago
Email:
h*********@gmail.com

Posts by Hughie

<prev • 28 results • page 1 of 3 • next >
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Comment: C: A question on MEME results
... Hi Mensur, I have followed your suggestions using `-pal` and got a reasonable result below: sampled results: I have also tried different -mod parameters including `anr`, but results are all weird except for `-mod zoops`, so, I may use this later. Thanks for your kind help! ...
written 5 months ago by Hughie20
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Comment: C: A question on MEME results
... Thank you again Mensur, I will try your advice and show the result later :) ...
written 5 months ago by Hughie20
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Comment: C: BagFoot TF foot printing
... Hi Ravi, I have sucessfully used this package before and I may give you some suggestions. The default result of bagfoot is without p-value / q-value, however, the code for statistical analysis exists in original bagfoot code. Just use `gen_bagplot_chisq()` instead of `gen_bagplot()` ....... ...
written 6 months ago by Hughie20
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Comment: C: BagFoot TF foot printing
... Hi rbronste, I have managed it to work recently after painful 5 days on debugging, I noticed this post is 15 months ago, So, if you still need some help, please email me at `hughiez047@gmail.com` and I will provide you my detailed records :-) Hope this helps, best wishes! ...
written 10 months ago by Hughie20
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Comment: C: BagFoot TF foot printing
... I have fine-tune the index file to fit .meme file and it works fine :-) ...
written 10 months ago by Hughie20
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Comment: C: BagFoot TF foot printing
... It' s due to replicted columns of pooled hotspot file and need some alteration on this file to get it work :-) ...
written 10 months ago by Hughie20
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Comment: C: BagFoot TF foot printing
... I have re-ranked my index file to fit .meme file and got normal result, Thank you! ...
written 10 months ago by Hughie20
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Comment: C: BagFoot TF foot printing
... I found that I omitted a line of the original code countCutcountOnSites <- function(cutcount, sites) But I don't know what this code function? It seems not a complete function. Thank you. ...
written 10 months ago by Hughie20
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Comment: C: BagFoot TF foot printing
... Thanks for reply,Mathilde, I exported meme file from MotifDb of JASPAR2018 and I downloaded index file from JASPAR website, the motif number and rank is a little different and I failed some of the motifs (Actually I indeed got some Fimo results) when runFIMOandMakeMotifList.R. So, I want to ask wh ...
written 10 months ago by Hughie20
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Comment: C: BagFoot TF foot printing
... Hi Mathilde, Does your index file function normally if you just skip the description field? ...
written 10 months ago by Hughie20

Latest awards to Hughie

Popular Question 4 months ago, created a question with more than 1,000 views. For Split fastq according to barcodes
Supporter 12 months ago, voted at least 25 times.

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