User: Hughie

gravatar for Hughie
Hughie10
Reputation:
10
Status:
New User
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Last seen:
1 week, 5 days ago
Joined:
1 year, 10 months ago
Email:
h*********@gmail.com

Posts by Hughie

<prev • 25 results • page 1 of 3 • next >
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Comment: C: BagFoot TF foot printing
... Hi rbronste, I have managed it to work recently after painful 5 days on debugging, I noticed this post is 15 months ago, So, if you still need some help, please email me at `hughiez047@gmail.com` and I will provide you my detailed records :-) Hope this helps, best wishes! ...
written 8 weeks ago by Hughie10
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Comment: C: BagFoot TF foot printing
... I have fine-tune the index file to fit .meme file and it works fine :-) ...
written 8 weeks ago by Hughie10
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Comment: C: BagFoot TF foot printing
... It' s due to replicted columns of pooled hotspot file and need some alteration on this file to get it work :-) ...
written 8 weeks ago by Hughie10
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Comment: C: BagFoot TF foot printing
... I have re-ranked my index file to fit .meme file and got normal result, Thank you! ...
written 8 weeks ago by Hughie10
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Comment: C: BagFoot TF foot printing
... I found that I omitted a line of the original code countCutcountOnSites <- function(cutcount, sites) But I don't know what this code function? It seems not a complete function. Thank you. ...
written 8 weeks ago by Hughie10
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Comment: C: BagFoot TF foot printing
... Thanks for reply,Mathilde, I exported meme file from MotifDb of JASPAR2018 and I downloaded index file from JASPAR website, the motif number and rank is a little different and I failed some of the motifs (Actually I indeed got some Fimo results) when runFIMOandMakeMotifList.R. So, I want to ask wh ...
written 8 weeks ago by Hughie10
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Comment: C: BagFoot TF foot printing
... Hi Mathilde, Does your index file function normally if you just skip the description field? ...
written 8 weeks ago by Hughie10
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Comment: C: Split fastq according to barcodes
... It's 10 times faster than my previous scripts and it only toke ~1h to split my 40G gzipped PE data! So, amazing! Thank you again :) ...
written 3 months ago by Hughie10
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Comment: C: Split fastq according to barcodes
... Thanks a lot for your reply fin swimmer! This solution is so amazing, and it's what I'm looking for. I have tested it on my server and I will report the running time later. By the way, linux command is so powerful and also complicated which I have a long way to go... ...
written 3 months ago by Hughie10
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Comment: C: Split fastq according to barcodes
... Thanks cpad0112 for your reply, I have tried this method before but it can only handle SE data, and I have to get a script for pairing read1 and read2. ...
written 3 months ago by Hughie10

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Supporter 3 months ago, voted at least 25 times.

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