User: slapiiv

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slapiiv20
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Posts by slapiiv

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Comment: C: bowtie --best, what exactly does it mean?
... Oh I see, bowtie is a bite confusing anyways, but I have undesrstand my specific doubt. Thanks. ...
written 9 days ago by slapiiv20
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Comment: C: bowtie --best, what exactly does it mean?
... Thanks, the answer that I was looking for is: a strata is a set of alignments where mismatches occur at identical positions. For example, suppose there are two 1-mismatch hits. One with the mismatch at 7th position and the other at the 9th position. The two hits are in two different strata. ...
written 9 days ago by slapiiv20
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Comment: C: Dual rnaseq normalization
... Nice, I will take a look but it seems very useful, thanks. ...
written 9 days ago by slapiiv20
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bowtie --best, what exactly does it mean?
... Hi, everybody: I am using bowtie for aligning smallRNAseq reads against a genome reference, I am using *--best* because it is recommended for miRNAs, but as you may know the bowtie`s manual is not clear enough as we the beginners need. Does somebody know what does it exactly means? --best ...
bowtie rna-seq mapping written 9 days ago by slapiiv20 • updated 9 days ago by Charles Warden6.6k
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Dual rnaseq normalization
... Hi everybody, I have performed a dual rnaseq (infected cells by a pathogen) at different points, at the beginning host-corresponding reads are more than 90% of the total, however, at a later point, I have almost 50% or reads corresponding to the host and 50% corresponding to the protozoo (total rea ...
normalization rna-seq written 9 days ago by slapiiv20 • updated 9 days ago by grant.hovhannisyan1.5k
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Comment: C: Find number of rows contain zero raw count across all sample (column) using R
... If my answer was helpful you should upvote it, ...
written 22 months ago by slapiiv20
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Comment: C: Find number of rows contain zero raw count across all sample (column) using R
... I´m sorry Devon, my point wasn´t be rude with your kid, my point is: Is really necesary answer in that way? If it is, why don´t program an automatic answer for your forum *"Try by yourself"*? (altought this would rest upvotes to Wouter) not all are "experts", most of people are looking for quick sol ...
written 22 months ago by slapiiv20
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Comment: C: Find number of rows contain zero raw count across all sample (column) using R
... You should write a philosophy book Wouter, really you think necesary answer "try by yourself"? really?. Has been more helpful writing help (which) by Devon than you in 2 comments. ...
written 22 months ago by slapiiv20

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Supporter 11 months ago, voted at least 25 times.

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