User: yarrowmadrona

Reputation:
0
Status:
New User
Last seen:
1 day, 18 hours ago
Joined:
4 months ago
Email:
y************@gamil.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by yarrowmadrona

<prev • 5 results • page 1 of 1 • next >
0
votes
1
answer
142
views
1
answers
Comment: C: RNA-seq RPKM >=1 increases after downsampling but RPKM >= 0.1 decreases after do
... Thank you, Very helpful (sorry for the delay in response). Just wanted to check. You are right, looks like random variation ...
written 1 day ago by yarrowmadrona0
0
votes
1
answer
142
views
1
answers
Comment: A: RNA-seq RPKM >=1 increases after downsampling but RPKM >= 0.1 decreases after do
... Thanks. Do you have any resources/guides on how to run a chi-square test in this context? ...
written 9 days ago by yarrowmadrona0
0
votes
1
answer
142
views
1
answer
RNA-seq RPKM >=1 increases after downsampling but RPKM >= 0.1 decreases after downsampling
... Seven million reads were downsampled to 2.3 million. The RPKM >= 1 increased from 12979 to 13247. Meanwhile, RPKM >= 0.1 decreased from 20311 to 18847. This behavior was consistent across four experiments. I'm sorry I cannot provide more information as this experiment was presented by a collea ...
next-gen rna-seq sequencing written 10 days ago by yarrowmadrona0
0
votes
1
answer
154
views
1
answers
Answer: A: Using cruzdb to retrieve SNP sequence including flanking
... In case anyone is interested I decided not to use dbcruz module and just to query dbSNP instead. Much easier. https://www.ncbi.nlm.nih.gov/projects/SNP/SNPeutils.htm ...
written 3 months ago by yarrowmadrona0
0
votes
1
answer
154
views
1
answer
Using cruzdb to retrieve SNP sequence including flanking
... I want to use cruzdb to query a list of SNPs by rs id in a text file and retrieve sequence including 200 basepairs flanking each SNP. I can do this in the UCSC genome browser table by selecting "Output format" = sequence. I have some code below that I sketched together from previous posts. from ...
ucsc genome browser cruzdb snp written 4 months ago by yarrowmadrona0

Latest awards to yarrowmadrona

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 591 users visited in the last hour