User: 13dsc

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13dsc0
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Posts by 13dsc

<prev • 7 results • page 1 of 1 • next >
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How do I Download a Portion of a Random Bacterial Genome
... I wish to download a snippet ~ 20kb - 60kb in length of a random bacterial genome. How would I go about randomizing it? I think that once I understand how to pick from the consortium of bacteria I should be able to figure out how to take a random portion of the genome. Cheers, Dragos ...
python biopython written 2.1 years ago by 13dsc0 • updated 2.1 years ago by 5heikki8.5k
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Comment: C: Trimming local GB file with Biopython
... will that keep the gene annotations associated with the gb file for that slice? ...
written 2.1 years ago by 13dsc0
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Trimming local GB file with Biopython
... I was wondering if I could use Biopython in order to trim a local gb file. Ex. I have a 100kb gb file but I am interested in a continuous 25kb portion. I know the location of the start and stop of the 25kb region. How do I create a gb file which contains only that 25kb portion from the larger file ...
python biopython genbank parsing written 2.1 years ago by 13dsc0 • updated 2.1 years ago by Joe14k
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Comment: C: Extracting a Genomic Region From Nucleotide Accession
... I am interested in comparing biosynthetic gene clusters in bacteria that share common enzymes required for the synthesis of the backbone of a natural product. I would rather not download a larger file than I need for the sake of time and bandwidth. ...
written 2.4 years ago by 13dsc0
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Extracting a Genomic Region From Nucleotide Accession
... I am trying to get a list of proteins in a genomic region surrounding a protein of interest identified by a protein accession number. I am using biopython and the entrez module. First I start off by getting a list of protein accession from GenBank and now I want to get an idea of the genomic region ...
gene python biopython written 2.4 years ago by 13dsc0
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Comment: C: Getting Protein GIs from a Nucleotide Range
... my bad I guess the correct question would be from accession numbers? I was also wondering what would I do for accession numbers with multiple nucleotide entries ex. non redundant protein sequences. ...
written 2.4 years ago by 13dsc0
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Getting Protein GIs from a Nucleotide Range
... I am wondering how to get the GI number of the proteins flanking a protein of interest based on a certain range. For example I have a GI number, SFC05498, and I want to get all of the other proteins that are located 30kb on either side of this protein. Cheers ...
gene python biopython blast written 2.4 years ago by 13dsc0

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