User: Ayité K

gravatar for Ayité K
Ayité K30
Reputation:
30
Status:
New User
Location:
France
Last seen:
2 years, 3 months ago
Joined:
2 years, 5 months ago
Email:
a********@yahoo.fr

Posts by Ayité K

<prev • 3 results • page 1 of 1 • next >
4
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Which tool to calculate nucleotide diversity stats?
... Hello, I have SNPs data in several vcf files and I would like to compute diversity stats like Pi, Tajima'D, Theta, ... . I have tryed vcftools which actually worked but all stats are not available. I am trying dnaSP with my data formated to fasta format. DnaSP is not a command line tool and it can ...
diversity stats snp written 2.3 years ago by Ayité K30 • updated 2.3 years ago by lessismore710
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Which tool to calculate per site stats on vcf file?
... Hello, Does anyone know a tool to calculate per site stats ( nb Homozygous Ref, nb Homozygous Alt , nb Heterozygous , nb NA ) on SNPs data in vcf formats? ...
vcf snp written 2.3 years ago by Ayité K30 • updated 2.3 years ago by rbagnall1.4k
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issue while converting vcf file to genind with vcfR
... I am using vcfR for several analysis. It works for a previous vcf file. But actually I got the following message while converting a vcf version 4.2 file to genind object with vcfR2genind: Warning message: In adegenet::df2genind(t(x), sep = sep) : entirely non-type individual(s) deleted Could an ...
vcf R snp written 2.5 years ago by Ayité K30 • updated 2.2 years ago by zkamvar0

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