User: Ayité K
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- 2 years, 5 months ago
Posts by Ayité K
... Hello, I have SNPs data in several vcf files and I would like to compute diversity stats like Pi, Tajima'D, Theta, ... . I have tryed vcftools which actually worked but all stats are not available. I am trying dnaSP with my data formated to fasta format. DnaSP is not a command line tool and it can ...
... Hello, Does anyone know a tool to calculate per site stats ( nb Homozygous Ref, nb Homozygous Alt , nb Heterozygous , nb NA ) on SNPs data in vcf formats? ...
... I am using vcfR for several analysis. It works for a previous vcf file. But actually I got the following message while converting a vcf version 4.2 file to genind object with vcfR2genind: Warning message: In adegenet::df2genind(t(x), sep = sep) : entirely non-type individual(s) deleted Could an ...
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