User: 932477002

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9324770020
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Posts by 932477002

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Should I do rarefaction before compute alpha and beta diversity in 16S anlaysis?
... Hi all, when doing 16S analysis in QIIME2, should I do rarefaction before calculating the alpha and beta diversity. There are a lot of debates on this question. ...
microbiome 16s rarefaction written 9 days ago by 9324770020
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Should alignments with low query cover be removed?
... Hi, everyone I was analyzing a vriome dataset these days. I aligned about 30 milions reads with the length of 150 bp to the NT database with BLASTn (I used botiew2 as well for confirming). Around 10 milions reads were mapped to the same gene on the basis of e-value (1e-10), but with low query cove ...
bowtie2 abnormal alignments blastn written 3.2 years ago by 9324770020 • updated 3.2 years ago by Buffo1.8k
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Gene abundance profile from metagenomics data
... Hi, alls I was dealing with a metagenome dataset. After prediction, I have created a catalogue consisting of all genes found from the dataset, and now I want to extrcat gene profiles (i.e. a list of genes with relative abundance). Do you know what tools can be used to profile the gene abundance ...
gene written 3.6 years ago by 9324770020 • updated 2.2 years ago by Biostar ♦♦ 20

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Popular Question 3.2 years ago, created a question with more than 1,000 views. For Gene abundance profile from metagenomics data

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