User: claudiorivero92

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Posts by claudiorivero92

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Comment: A: choosing a suitable max intron size for STAR (plant alignment)
... Hi, we have done RNA-seq analysis and to optimize parameters for plant genomes, minimum and maximum intron lengths were set as 60 and 6000 according to what was described for splicing in Arabidopsis (Márquez et al., 2010); ...
written 2.1 years ago by claudiorivero920
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STAR parameters in plants genomes
... Dear all, I want to use the STAR alignment tool available in usegalaxy.org, i know that the default parameters are optimized for mammalian genomes, in my case it's for plant genomes, particulary for legumes. So which parameter i should to change, in my alignment? I know that the intron size is an im ...
plant star rna-seq written 2.1 years ago by claudiorivero920

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