User: oghzzang

gravatar for oghzzang
oghzzang40
Reputation:
40
Status:
New User
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Last seen:
4 months, 2 weeks ago
Joined:
3 years, 4 months ago
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o*******@gmail.com

Posts by oghzzang

<prev • 40 results • page 1 of 4 • next >
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XS tag in SAM file
... Dear users, Hi. I'm oh. I have questions about pre-processed bam by GATK4 pipeline (https://github.com/gatk-workflows/gatk4-data-processing/blob/master/processing-for-variant-discovery-gatk4.wdl). In these processes, they only recommended "--ATTRIBUTES_TO_RETAIN X0" in MergeBamAlignment step. ...
gatk4 xs uq written 4 months ago by oghzzang40 • updated 4 months ago by finswimmer13k
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Comment: C: Parse allele database
... Thanks. From now, I'll use this button. :) ...
written 17 months ago by oghzzang40
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Comment: C: Parse allele database
... Thank you for your help. ...
written 17 months ago by oghzzang40
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Parse allele database
... Dear Biostars users. I have this variant format. ex) CHROM POS REF ALT 1 150 CAC CAAC Can I this format change following format using python? CHROM POS REF ALT 1 150 C CA 1 151 A AA ...
python written 17 months ago by oghzzang40 • updated 17 months ago by RamRS30k
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Comment: C: ExAC non-TCGA mean
... In this web-site. http://exac.broadinstitute.org/faq ...
written 18 months ago by oghzzang40 • updated 8 months ago by RamRS30k
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Comment: C: ExAC non-TCGA mean
... Thanks for your help. ...
written 18 months ago by oghzzang40
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Comment: C: ExAC non-TCGA mean
... Thanks for your reply. :) ...
written 18 months ago by oghzzang40
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ExAC non-TCGA mean
... Greetings, Hi. I have questions. I really want to know what "ExAC non-TCGA" means. As I know, TCGA ExAC is derived from matched germline sample of "cancer patients" and this is annotated by "cancer" samples. Can I understand that "ExAC non-TCGA" is derived from probably healthy samples? ...
db dna written 20 months ago by oghzzang40 • updated 19 months ago by igor11k
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Comment: C: Have you ever obtained user guide of ExomeCNV?
... Dear biobiu. Thanks for your help. But, as I know, "ExomeCNV.pdf" is explanation of tool (R document ). I hope to find "user guide". In the document ("ExomeCNV.pdf"), authors described like this "Reference was from "https://secure.genome.ucla.edu/index.php/ExomeCNV_User_Guide". Thank you so ...
written 20 months ago by oghzzang40
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Have you ever obtained user guide of ExomeCNV?
... Dear biostar users. I can't obtain the user guide of ExomeCNV. In the paper and package manual, they described this website "https://secure.genome.ucla.edu/index.php/ExomeCNV_User_Guide". But I can't access the website. If anyone knows the changed website, please let me know. Thanks. Oh. ...
cnv written 20 months ago by oghzzang40 • updated 10 months ago by lffu_003260

Latest awards to oghzzang

Popular Question 4 months ago, created a question with more than 1,000 views. For I got extremely low alignment rate running HiSAT2 and Tophat2
Popular Question 11 months ago, created a question with more than 1,000 views. For I got extremely low alignment rate running HiSAT2 and Tophat2
Popular Question 11 months ago, created a question with more than 1,000 views. For GATK4 BaseRecalibrator and Target region (whole exome data)
Popular Question 13 months ago, created a question with more than 1,000 views. For I got extremely low alignment rate running HiSAT2 and Tophat2
Popular Question 17 months ago, created a question with more than 1,000 views. For I got extremely low alignment rate running HiSAT2 and Tophat2

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