User: anicet.ebou
anicet.ebou • 160
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... Hello @anais1386, can you run `systemInfo()` in your R terminal and paste the output to help us understand the issue ? Thanks you in advance. ...
written 23 months ago by
anicet.ebou • 160
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...
Another method:
1. Use option `-outfmt 5` in BLAST+ suite command line. This will give you a xml file as output.
2. Use this little python script to parse rapidly data.
import re
output = open('file.out','w')
n = 0
print >> output, 'protein'+'\t'+'h ...
written 2.0 years ago by
anicet.ebou • 160
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... Fix the issue by changing https by http. Thanks everybody. ...
written 2.1 years ago by
anicet.ebou • 160
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7 follow
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... The objective of bioSyntax is to bring you closer to your data, giving you an intuitive & empathetic understanding of biology.
bioSyntax integrates seamlessly with vim, less, gedit, & sublime to automatically recognize your favorite biological file formats.
For more informations please visi ...
written 2.1 years ago by
anicet.ebou • 160
• updated
21 months ago by
ababaian • 20
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... Please include sample data and What do you expect the result to be and what was you result when you launch your analysis?
With that answer we can improve your analysis. ...
written 2.1 years ago by
anicet.ebou • 160
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... If i clearly understand your question you want to use the LIMMA package to perform ANOVA in your microarray analysis? ...
written 2.1 years ago by
anicet.ebou • 160
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3
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2.6k
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3
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... 1. Firstly you should learn [Python][1], [Perl][2], [Bioperl][3] and [Biopython][4] and [R/Bioconductor][7].
2. Bioinformaticians don't like to work on windows even if you install Cygwin. So you absolutely need a linux distros and i strongly recommend [Ubuntu][5] because of the community. So when a ...
written 2.1 years ago by
anicet.ebou • 160
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7
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... Ubuntu.
Because of the community and all the ressources available it will be more easy for your student to get in touch.
When i was on my first project (Transcriptomics to predict toxins peptide-like components in venom gland of a spider), the community help me a lot to master in few days basics ...
written 2.1 years ago by
anicet.ebou • 160
1
vote
2
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902
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2
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... Hi everyone,
I have wrote a perl script to retrieve Go annotations (Molecular Function especially with go id). To retrieve go annotation i use a chunck from R that can do this in few lines, and use Perl to format the output. But it's not working.
I have got this error:
Global symbol "$lin ...
written 2.5 years ago by
anicet.ebou • 160
• updated
2.5 years ago by
EagleEye ♦ 6.5k
0
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1
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... #!/usr/bin/perl
use strict;
use warnings;
use Bio::Seq;
use Bio::DB::SwissProt;
use SWISS::Entry;
print "Please enter the accession number ... ";
$_ = ;
my $db_obj = Bio::DB::SwissProt->new;
my $seq_obj = $db_obj->get_ ...
written 2.6 years ago by
anicet.ebou • 160
• updated
2.6 years ago by
WouterDeCoster ♦ 42k
Latest awards to anicet.ebou
Popular Question
11 months ago,
created a question with more than 1,000 views.
For Script to run blast locally with multiple files in a directory as queries
Popular Question
23 months ago,
created a question with more than 1,000 views.
For Script to run blast locally with multiple files in a directory as queries
Appreciated
2.1 years ago,
created a post with more than 5 votes.
For Announcing bioSyntax: Syntax highlighting for biological files
Teacher
2.1 years ago,
created an answer with at least 3 up-votes.
For A: Recommendations of Linux distros for beginners in bioinformatics
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