User: Robert Ernst

gravatar for Robert Ernst
Robert Ernst60
Reputation:
60
Status:
New User
Location:
Rotterdam, The Netherlands.
Website:
https://www.linkedin.c...
Last seen:
8 years, 3 months ago
Joined:
8 years, 4 months ago
Email:
r***********@wur.nl

Master student Bio-Informatics, Wageningen University.

Posts by Robert Ernst

<prev • 7 results • page 1 of 1 • next >
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Answer: A: Secondary Structure Analysis With Dssp In R
... I don't know the package/software. But when i google on "bio3d dssp" I find this information: I think you have to set the path to the .exe, not the location of the .exe it self. So: x <- dssp(pdb, exepath="C:/dssp/") And secondly: "Call the dssp function with this directory as the exepath arg ...
written 8.3 years ago by Robert Ernst60
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Comment: C: Best Free Text Editor For All Popular Languages (R, Python, Perl Etc..)
... Rstudio standalone versions works great as well! ...
written 8.3 years ago by Robert Ernst60
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Answer: A: Structural Variations (Sv) Annotation Workflow
... I have basically the same question. I have to create a SV pipeline as a project on my master. We also have to include some sort of annotation. For now we annotate the output via a GFF file. The GFF contains all the positions of genes, exons, introns etc. We compare these positions with our SV list. ...
written 8.4 years ago by Robert Ernst60
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Comment: C: Retrieve Protein Id And Description From Fasta Header Using Python?
... Agree, but if you really want to use python, you can use .split -> http://docs.python.org/library/string.html#string.split ...
written 8.4 years ago by Robert Ernst60
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Answer: A: Add Sequences To A List From A Complex Fasta File In Python
... You are going in the right direction! You should add a piece of code that puts your data string into a "sequence_list" when the line starts with a ">". And further more to make sure that there are no empty data objects added to your sequence_list you should put this in a if statement (if data != ...
written 8.4 years ago by Robert Ernst60
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Comment: C: Calculating Averages For Windows
... I did a fast check and the script works fine for me. The only thing that should be implemented is to skip the first line of the file if it contains a header. This can be done in different ways. If you not do this, you will get an error from float(linedata[2]). ...
written 8.4 years ago by Robert Ernst60
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Answer: A: In Writing Biomedical Applications, Which Disadvantages Of R/Advantages Of Pytho
... First of all Python is also interpreted. And there are actually some IDE's available for R, for instance Rstudio. But to come back to your question. Just use what suits you or your goal, but if you want more power or advanced programming options you should use a real programming language. ...
written 8.4 years ago by Robert Ernst60

Latest awards to Robert Ernst

Teacher 8.4 years ago, created an answer with at least 3 up-votes. For A: In Writing Biomedical Applications, Which Disadvantages Of R/Advantages Of Pytho

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