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8
votes
9
replies
1.3k
views
PCA proteomic DEP
PCA DEP
updated 7 months ago by 87k • written 7 months ago by ▴ 350
5
votes
5
replies
1.2k
views
bedtools coverage, Use “stdin”
Chip-seq bedtools
updated 9 months ago by ★ 1.7k • written 2.2 years ago by ▴ 350
7
votes
5
replies
864
views
DESeq or FPKM
Expression Gene DESeq
updated 16 months ago by 100k • written 16 months ago by ▴ 350
2
votes
2
replies
871
views
BioMart
Biomart
updated 11 months ago by 43k • written 16 months ago by ▴ 350
0
votes
10
replies
2.2k
views
DeSeq2 "some values in assay are negative"
RNAseq
17 months ago by Morris_Chair ▴ 350
0
votes
0
replies
345
views
Enrichedheatmap files to use
heatmap Chip-Seq
2.2 years ago by Morris_Chair ▴ 350
5
votes
3
replies
829
views
promoters hg38 coordinates
Chip-seq
updated 2.2 years ago by ★ 16k • written 2.2 years ago by ▴ 350
0
votes
2
replies
678
views
chip-seq heatmap for all genome
Chip-seq
2.2 years ago by Morris_Chair ▴ 350
2
votes
2
replies
658
views
Chip-seq intersect TSS
Chip-seq
2.2 years ago by Morris_Chair ▴ 350
2
votes
1
reply
644
views
DNA Methylome and RNA-seq intersect
RNA-seq Methylome DNA
updated 2.7 years ago by ▴ 50 • written 2.7 years ago by ▴ 350
16
votes
14
replies
17k
views
7 follow
Ensembl ID to ENTREZ best converter
gene
updated 3.1 years ago by • 0 • written 3.9 years ago by ▴ 350
2
votes
2
replies
515
views
we are looking for ChIP and sequencing Service
ChIP-Seq
3.3 years ago by Morris_Chair ▴ 350
3
votes
4
replies
612
views
Define genes containing new found motif
ChIP-Seq
updated 3.4 years ago by 20 • written 3.4 years ago by ▴ 350
0
votes
0
replies
559
views
motif frequency and motif binding proteins prediction
ChIP-Seq
3.4 years ago by Morris_Chair ▴ 350
6
votes
9
replies
2.1k
views
grep -v remove fasta sequence
ChIP-Seq
3.4 years ago by Morris_Chair ▴ 350
2
votes
4
replies
713
views
extract multiples regions from IGV
ChIP-Seq
3.4 years ago by Morris_Chair ▴ 350
0
votes
32
replies
9.4k
views
DoHeatmap clusters, Seurat pipeline
scRNA-sequencing
3.6 years ago by Morris_Chair ▴ 350
2
votes
4
replies
1.3k
views
GSVA and Log2FC
GSVA
3.6 years ago by Morris_Chair ▴ 350
13
votes
6
replies
12k
views
FindAllMarkers pct1 and pct2
RNA-Seq Seurat
updated 2.1 years ago by ★ 16k • written 4.4 years ago by ▴ 350
2
votes
3
replies
666
views
MACS sampling down
ChIP-Seq
3.8 years ago by Morris_Chair ▴ 350
3
votes
2
replies
633
views
bowtie mate 2 error
ChIP-Seq
updated 3.8 years ago by 35k • written 3.8 years ago by ▴ 350
1
vote
5
replies
955
views
samtools sort error
ChIP-Seq
3.8 years ago by Morris_Chair ▴ 350
10
votes
22
replies
6.0k
views
GSVA R packages
GSVA
updated 2.7 years ago by 87k • written 4.0 years ago by ▴ 350
14
votes
18
replies
9.2k
views
6 follow
From StringTie to DESeq2
RNA-Seq
updated 4.1 years ago by ▴ 50 • written 5.1 years ago by ▴ 350
0
votes
0
replies
2.3k
views
Linking SEURAT to DiffusionMAP
RNA-Seq scRNA-seq SEURAT
4.3 years ago by Morris_Chair ▴ 350
5
votes
5
replies
2.9k
views
SEURAT scRNA-seq and library contribution for each cluster
RNA-Seq
updated 4.3 years ago by ▴ 20 • written 4.3 years ago by ▴ 350
1
vote
5
replies
1.7k
views
markers to define a cell population in a single UMAP
RNA-Seq scRNA-seq Seurat
updated 3 months ago by • 0 • written 4.3 years ago by ▴ 350
6
votes
9
replies
1.3k
views
scRNA-seq reduction plot for individual group
RNA-Seq R
4.3 years ago by Morris_Chair ▴ 350
6
votes
2
replies
4.5k
views
scRNA-seq and mitochondria DNA percentage
RNA-Seq
updated 4.4 years ago by ★ 16k • written 4.4 years ago by ▴ 350
5
votes
1
reply
3.6k
views
GSEA and normalized reads count
RNA-Seq DESeq2 GSEA
4.5 years ago by Morris_Chair ▴ 350
2
votes
1
reply
4.0k
views
computeMatrix bed format files
ChIP-Seq deeptools
4.5 years ago by Morris_Chair ▴ 350
4
votes
7
replies
2.1k
views
(Galaxy) MACS2 peaks threshold
ChIP-Seq macs2
4.5 years ago by Morris_Chair ▴ 350
6
votes
2
replies
4.4k
views
SLURM on Mac OS
ChIP-Seq
4.6 years ago by Morris_Chair ▴ 350
3
votes
7
replies
1.3k
views
MACS2 and single file for analysis
ChIP-Seq
4.6 years ago by Morris_Chair ▴ 350
2
votes
1
reply
1.2k
views
Pheatmap and SD
RNA-Seq
updated 4.6 years ago by 87k • written 4.6 years ago by ▴ 350
4
votes
1
reply
2.1k
views
Salmon GC bias with caution
RNA-Seq salmon
updated 4.7 years ago by 35k • written 4.7 years ago by ▴ 350
2
votes
8
replies
2.8k
views
including batch in design~
DESeq2 RNA-Seq
4.7 years ago by Morris_Chair ▴ 350
2
votes
2
replies
1.1k
views
convert MSTRG to human-readable format
RNA-Seq MSTRG
4.8 years ago by Morris_Chair ▴ 350
1
vote
7
replies
2.2k
views
ballgown and pData
RNA-Seq ballgown
updated 14 months ago by ▴ 100 • written 4.8 years ago by ▴ 350
7
votes
8
replies
2.4k
views
bed graph and IGV
Chip-seq biostar handbook
4.8 years ago by Morris_Chair ▴ 350
3
votes
3
replies
1.5k
views
Salmon quasi Index upgrade
RNA-Seq salmon
updated 4.9 years ago by 43k • written 4.9 years ago by ▴ 350
4
votes
2
replies
3.5k
views
DESeq2 log2 fold change
RNAseq DESeq2
5.0 years ago by Morris_Chair ▴ 350
2
votes
4
replies
1.1k
views
DESeq2, coldata parameter
RNA-Seq R
updated 5.0 years ago by 20 • written 5.1 years ago by ▴ 350
0
votes
1
reply
932
views
fastqc acceptable file
RNAseq fastqc
5.0 years ago by Morris_Chair ▴ 350
3
votes
8
replies
2.2k
views
Chunks erros with STAR aligner
RNA-Seq STAR
5.0 years ago by Morris_Chair ▴ 350
5
votes
8
replies
1.9k
views
cutadapt low read adapters percentage
RNA-Seq adapter
5.0 years ago by Morris_Chair ▴ 350
0
votes
5
replies
1.3k
views
Download transcriptome.csv for tximport analysis
RNA-Seq sequence gene
5.1 years ago by Morris_Chair ▴ 350
8
votes
1
reply
5.0k
views
Salmon (quant.sf) to txtimport
RNA-Seq R
5.1 years ago by Morris_Chair ▴ 350
1
vote
4
replies
6.8k
views
Stringtie --merge and gtf_list.txt issue
RNA-Seq
5.1 years ago by Morris_Chair ▴ 350
10
votes
16
replies
4.1k
views
HISAT2 reference genomes and starting code
RNA-Seq
5.1 years ago by Morris_Chair ▴ 350
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