User: Oskar

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Oskar20
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Posts by Oskar

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Answer: A: tophat 2 rna seq
... Hi Dimitris - I guess you want a small sample of your reads for testing and debugging purposes. If so, you can create a file containing a small number of reads. For example: $ zcat myreads.fastq.gz | head -400000 | gzip > Test100k.fastq.gz which takes the first 100k reads from “myreads” and st ...
written 3 months ago by Oskar20
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Comment: C: PLINK Reference haplotype for Odd Ratio calculation
... Dear cobraimovic - I had the same issue. Nevertheless, I figured it out that if you run the following command, you will get the information for "CA" haplotype as the reference haplotype under the Null model plink --file dataset.ped --chap --hap-snps rs1-rs2 --ci 0.95 --control GA,GG,CG --out result ...
written 3 months ago by Oskar20

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