User: svitlana.lukicheva

Reputation:
10
Status:
New User
Location:
Brussels, Belgium
Twitter:
@svit_lukicheva
Last seen:
3 months ago
Joined:
2 years, 11 months ago
Email:
s*****************@gmail.com

Posts by svitlana.lukicheva

<prev • 3 results • page 1 of 1 • next >
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Comment: C: Genome annotation with BRAKER: how to interpret the results?
... Thank you for your reply! I also have a fasta file with AA and another with coding sequences, both containing 54 k genes. The command I executed is: braker.pl --cores 16 --species=mySpecies --genome=genome_softmasked.fa --bam=rnaseq_masked_sorted.bam --softmasking --gff3 ...
written 11 months ago by svitlana.lukicheva10
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Genome annotation with BRAKER: how to interpret the results?
... Hello, I am new to the genome annotation and I'm lost with the interpretation of results produced by BRAKER. - I have a de novo assembly of an insect genome (N50 = 350kb, length = 1.9 Gb). - I masked the repeats using RepeatModeler and RepeatMasker. - I mapped the RNA-Seq data from the same spe ...
annotation braker written 11 months ago by svitlana.lukicheva10
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Answer: A: Error in repeatmodeler consensi file output
... Hello, this question was answered here: [RepeatModeler GitHub][1] [1]: https://github.com/rmhubley/RepeatModeler/issues/9 ...
written 13 months ago by svitlana.lukicheva10

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