User: svitlana.lukicheva

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Posts by svitlana.lukicheva

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Comment: C: Genome annotation with BRAKER: how to interpret the results?
... Thank you for your reply! I also have a fasta file with AA and another with coding sequences, both containing 54 k genes. The command I executed is: braker.pl --cores 16 --species=mySpecies --genome=genome_softmasked.fa --bam=rnaseq_masked_sorted.bam --softmasking --gff3 ...
written 1 day ago by svitlana.lukicheva0
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Genome annotation with BRAKER: how to interpret the results?
... Hello, I am new to the genome annotation and I'm lost with the interpretation of results produced by BRAKER. - I have a de novo assembly of an insect genome (N50 = 350kb, length = 1.9 Gb). - I masked the repeats using RepeatModeler and RepeatMasker. - I mapped the RNA-Seq data from the same spe ...
annotation braker written 5 days ago by svitlana.lukicheva0
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Answer: A: Error in repeatmodeler consensi file output
... Hello, this question was answered here: [RepeatModeler GitHub][1] [1]: https://github.com/rmhubley/RepeatModeler/issues/9 ...
written 9 weeks ago by svitlana.lukicheva0

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