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Posts by bsb4390
... I am trying to obtain a list of all tcga cases for which there is a specific cnv (for example - brca2 gains). Using the GDC portal to access this data, I am able to get a list of all cases containing cnv's related to brca2, but I am unable to split this list into cases for which there is brca2 gain ...
... Is there a method similar to bedtools slop that allows extension of bed intervals to a set size? My bed intervals are all different lengths and while I know slop can extend each by a set size, is there a method that can extend all to a uniform length? Thanks ...
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