User: bsb4390

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bsb43900
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Posts by bsb4390

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How to download a list of cases containing specific cnvs from TCGA?
... I am trying to obtain a list of all tcga cases for which there is a specific cnv (for example - brca2 gains). Using the GDC portal to access this data, I am able to get a list of all cases containing cnv's related to brca2, but I am unable to split this list into cases for which there is brca2 gain ...
tcga cnv written 6 months ago by bsb43900 • updated 6 months ago by Kevin Blighe43k
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How to extend bed intervals to a uniform size?
... Is there a method similar to bedtools slop that allows extension of bed intervals to a set size? My bed intervals are all different lengths and while I know slop can extend each by a set size, is there a method that can extend all to a uniform length? Thanks ...
bedtools bed genome written 22 months ago by bsb43900 • updated 12 months ago by Biostar ♦♦ 20

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