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Comment: Comment: For CreateSeuratObject, Where Do the Values for min.cells and min.features come
3 months ago by jared.andrews07 ★ 16k
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671
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Comment: Comment: DESeq2 heatmap with low baseMean values
3 months ago by jared.andrews07 ★ 16k
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886
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Comment: Comment: Batch and Sample correction for downstream analysis using DESeq2
4 months ago by jared.andrews07 ★ 16k
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886
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Comment: Comment: Batch and Sample correction for downstream analysis using DESeq2
4 months ago by jared.andrews07 ★ 16k
1
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1
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886
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Comment: Comment: Batch and Sample correction for downstream analysis using DESeq2
4 months ago by jared.andrews07 ★ 16k
2
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1
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987
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Answer: Answer: RNA Contamination Tool for Developing Cell Samples
4 months ago by jared.andrews07 ★ 16k
1
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1
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886
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Answer: Answer: Batch and Sample correction for downstream analysis using DESeq2
4 months ago by jared.andrews07 ★ 16k
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466
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Comment: Comment: Single cell visulaisation webtool
4 months ago by jared.andrews07 ★ 16k
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0
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470
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Comment: Comment: R ComplexHeatmap - Adujusting the cell size in heatmap
4 months ago by jared.andrews07 ★ 16k
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0
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541
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Answer: Answer: Website or tool to obtain a list of genes that participate in a specific process
4 months ago by jared.andrews07 ★ 16k
4
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1
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564
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Answer: Answer: Ambient RNA removal method that generates whole (integer) counts
4 months ago by jared.andrews07 ★ 16k
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0
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496
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Answer: Answer: RNA-seq log2 fold change to linear
4 months ago by jared.andrews07 ★ 16k
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1.5k
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Comment: Comment: mouse+human cells in 10x scRNA-seq
4 months ago by jared.andrews07 ★ 16k
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377
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Answer: Answer: What type of cancer did they study in this paper?
4 months ago by jared.andrews07 ★ 16k
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0
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672
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Comment: Comment: Calculation of ChIP-seq normalization factors with non-conventional spike-in ass
5 months ago by jared.andrews07 ★ 16k
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0
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672
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Comment: Comment: Calculation of ChIP-seq normalization factors with non-conventional spike-in ass
5 months ago by jared.andrews07 ★ 16k
0
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4
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672
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Calculation of ChIP-seq normalization factors with non-conventional spike-in assumptions
DiffBind csaw normalization spikein ChIPseq
5 months ago by jared.andrews07 ★ 16k
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1
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773
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Answer: Answer: Doheatmap in seurat
5 months ago by jared.andrews07 ★ 16k
2
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1
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424
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Answer: Answer: DepMap Portal
5 months ago by jared.andrews07 ★ 16k
1
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1
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876
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Answer: Answer: How to remove the default title to a DimPlot() splitted into two by group.by ?
5 months ago by jared.andrews07 ★ 16k
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0
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596
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Comment: Comment: macs2 output r file not generated
6 months ago by jared.andrews07 ★ 16k
2
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1
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596
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Answer: Answer: macs2 output r file not generated
6 months ago by jared.andrews07 ★ 16k
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0
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493
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Answer: Answer: Visium data analysis software supporting deconvolution analysis
6 months ago by jared.andrews07 ★ 16k
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0
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363
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Comment: Comment: I'm doing RNA seq but the quality control sequence GC contens shape looks weird.
6 months ago by jared.andrews07 ★ 16k
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1
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1.4k
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Answer: Answer: Mentor for a beginner bioinformatics student
6 months ago by jared.andrews07 ★ 16k
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0
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600
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Comment: Comment: 2 dimensional quadrant plot
6 months ago by jared.andrews07 ★ 16k
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1
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1.8k
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Comment: Comment: ROSE Algorithm: index out of range
6 months ago by jared.andrews07 ★ 16k
1
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0
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5.6k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
6 months ago by jared.andrews07 ★ 16k
1
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1
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5.6k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
6 months ago by jared.andrews07 ★ 16k
0
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0
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5.6k
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Comment: Comment: Macbook M1 pro/M2 pro or Dell (with Ubuntu/other linux distribution) for bioinfo
6 months ago by jared.andrews07 ★ 16k
1
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0
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635
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Comment: Comment: Chip-Seq and correlation of bam file
6 months ago by jared.andrews07 ★ 16k
2
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1
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635
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Answer: Answer: Chip-Seq and correlation of bam file
6 months ago by jared.andrews07 ★ 16k
1
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0
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370
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Answer: Answer: Transcription factor co-localization p-values
6 months ago by jared.andrews07 ★ 16k
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0
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879
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Comment: Comment: Filter human transcription factors
6 months ago by jared.andrews07 ★ 16k
6
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3
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879
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Answer: Answer: Filter transcription factors
6 months ago by jared.andrews07 ★ 16k
0
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0
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1.4k
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Comment: Comment: scRNAseq Differential expression analysis
6 months ago by jared.andrews07 ★ 16k
0
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1
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564
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Answer: Answer: GSEA Result Visualization in R
7 months ago by jared.andrews07 ★ 16k
9
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1
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3.4k
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Comment: Comment: A list of technical advantages of Snakemake over Nextflow | Cloud solution for S
7 months ago by jared.andrews07 ★ 16k
1
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1
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873
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Comment: Comment: Is there a benchmark analysis for the best tool for multiome single-cell RNA+ATA
7 months ago by jared.andrews07 ★ 16k
0
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1
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873
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Comment: Comment: Is there a benchmark analysis for the best tool for multiome single-cell RNA+ATA
7 months ago by jared.andrews07 ★ 16k
1
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0
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786
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Answer: Answer: trajectory-like graph for a data frame
7 months ago by jared.andrews07 ★ 16k
1
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1
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2.2k
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Comment: Comment: Seeking feedback on ChIP-seq normalization method: Calculating scaling factors b
7 months ago by jared.andrews07 ★ 16k
1
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1
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721
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Comment: Comment: Joint RNA and ATAC analysis: 10x multiomic - Fragment Path
7 months ago by jared.andrews07 ★ 16k
0
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1
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721
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Answer: Answer: Joint RNA and ATAC analysis: 10x multiomic - Fragment Path
7 months ago by jared.andrews07 ★ 16k
1
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0
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1.0k
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Comment: Comment: Cluster annotation in single cell
7 months ago by jared.andrews07 ★ 16k
1
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1
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1.1k
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Comment: Comment: How to remove the gene label in heatmap RNA-seq
7 months ago by jared.andrews07 ★ 16k
3
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1
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1.1k
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Answer: Answer: How to remove the gene label in heatmap RNA-seq
7 months ago by jared.andrews07 ★ 16k
1
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1
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499
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Answer: Answer: how to filter the scRNAseq data, by percent genes expression, counts and others
7 months ago by jared.andrews07 ★ 16k
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1
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1.0k
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Comment: Comment: Batch correction in DESeq2 - limited impact for unsupervised downstream analyses
7 months ago by jared.andrews07 ★ 16k
1
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1
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1.3k
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Comment: Comment: ChIP-seq visualization: Is it valid to do a coverage normalization in addition t
7 months ago by jared.andrews07 ★ 16k
1,456 results • Page 2 of 30
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