User: anandprem1792
anandprem1792 • 20
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Posts by anandprem1792
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... I am analyzing a GEO dataset of platform (GPL17077) Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray. I followed the steps given in LIMMA user guide 2016 (page number 110-112). The protocol given there is for Agilent
4x44K Arrays. So my question is whether i have to filter out control probes ...
written 21 months ago by
anandprem1792 • 20
• updated
19 months ago by
Biostar ♦♦ 20
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... Thank you for the suggestion. As you said I will filter by "adjusted p-value" first. ...
written 21 months ago by
anandprem1792 • 20
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... Thank you for the help. ...
written 21 months ago by
anandprem1792 • 20
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... In Biostars forum for differential gene expression analysis by LIMMA I found that most people suggest to set a threshold value of Log2FC > or = 2 to filter DEGs. When I analyzed the GEO dataset "GSE90594" - Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 platform for DEGs by LIMM ...
written 21 months ago by
anandprem1792 • 20
• updated
21 months ago by
WouterDeCoster ♦ 45k
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... Can anyone tell me how to download the PPI network file from REACTOME database. I want to view that file in cytoscape. In which format I should download the file in reactome ? ...
written 3.3 years ago by
anandprem1792 • 20
• updated
3.3 years ago by
Jean-Karim Heriche ♦ 24k
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... Can anyone suggest me a good tutorial for gene expression analysis from microarray data. Please provide links for the tutorials thanks. ...
written 3.5 years ago by
anandprem1792 • 20
• updated
3.5 years ago by
h.mon ♦ 32k
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