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Showing :
questions
8
votes
12
replies
4.0k
views
Is there any precedent for considering marked duplicates when calculating coverage in high-depth whole-exome sequencing?
exome
exome-seq
coverage
duplicates
updated 6.0 years ago by
marco_ul
• 0 • written 6.5 years ago by
Dan D
7.4k
6
votes
4
replies
4.4k
views
What Is A Good Strategy For Finding Common Bacterial Sequences In A Potentially Contaminated Human Sample?
mapping
updated 8.2 years ago by
steve
★ 3.5k • written 11.4 years ago by
Dan D
7.4k
8
votes
2
replies
2.7k
views
Is there any aligner which supports soft clipping a fixed number of bases from reads prior to alignment?
alignment
soft-clipping
updated 2.3 years ago by
Ram
44k • written 9.5 years ago by
Dan D
7.4k
5
votes
3
replies
2.1k
views
Is there a programmatically-accessible human pathogenicity database available?
pathogens
database
updated 9.9 years ago by
Jeremy Leipzig
22k • written 9.9 years ago by
Dan D
7.4k
3
votes
2
replies
2.6k
views
Does anyone know what happened to the Retroviral Tagged Cancer Gene Database at NCI Frederick?
rtcgd
updated 2.7 years ago by
Ram
44k • written 10.0 years ago by
Dan D
7.4k
5
votes
6
replies
4.4k
views
Should quality scores be considered when discriminating between optical and library duplicates?
opticalduplicates
duplication
picard
updated 3.6 years ago by
Ram
44k • written 10.1 years ago by
Dan D
7.4k
9
votes
6
replies
7.2k
views
How To Find Comprehensive List Of Rrna Locations For C. Elegans?
rrna
bed
updated 10.7 years ago by
Biostar
20 • written 11.1 years ago by
Dan D
7.4k
11
votes
15
replies
4.6k
views
6 follow
What Is A Good Strategy For Distributing Ngs Data From A Core Facility?
updated 10.9 years ago by
Biostar
20 • written 11.7 years ago by
Dan D
7.4k
14
votes
8
replies
5.1k
views
Unable To Replicate Splice Junction In Tophat
tophat2
bam
11.1 years ago by
Dan D
7.4k
2
votes
4
replies
3.5k
views
Is There An Explanation For This Tophat "Yt" Descriptor Discrepancy In My Sam Output?
igv
sam
tophat
bowtie
11.1 years ago by
Dan D
7.4k
5
votes
7
replies
4.5k
views
How To Interpret Funky Vcf Output?
vcf
samtools
mpileup
bcftools
rna-seq
updated 11.3 years ago by
Biostar
20 • written 12.1 years ago by
Dan D
7.4k
3
votes
2
replies
2.0k
views
Will A Missing Base In 1/8Th Of The Reads Of A Sample Hamper De Novo Transcriptome Assembly?
assembly
transcriptome
updated 11.5 years ago by
Fabio Marroni
★ 3.0k • written 11.5 years ago by
Dan D
7.4k
8
votes
10
replies
3.2k
views
How Can I Find Transcripts Which Omit Specific Exons Of A Gene?
rna-seq
transcript
expression
exon
updated 12.0 years ago by
JC
13k • written 12.0 years ago by
Dan D
7.4k
5
votes
7
replies
7.1k
views
Anyone Have Suggestions For De Novo Assembly Of A Genome From Miseq 250 Pe Data?
denovo
assembly
miseq
updated 12.1 years ago by
liz.batty
▴ 30 • written 12.1 years ago by
Dan D
7.4k
9
votes
3
replies
3.4k
views
What Is A "Coverage Island" In The Context Of Tophat?
tophat
next-gen
updated 12.4 years ago by
Ryan Thompson
★ 3.6k • written 12.4 years ago by
Dan D
7.4k
11
votes
9
replies
6.3k
views
How To Get "Alternate Gene Name" (Gene_Id) From Ucsc Table Browser?
ucsc
bed
browser
updated 12.5 years ago by
Gjain
5.8k • written 12.5 years ago by
Dan D
7.4k
2
votes
3
replies
2.2k
views
Demultiplexing Only Part Of A Pe Flowcell With Casava 1.8.2
illumina
next-gen
12.5 years ago by
Dan D
7.4k
5
votes
4
replies
4.2k
views
Pipeline Pilot Vs. Galaxy For Nextgen Data Analysis
pipeline
galaxy
updated 12.7 years ago by
Raygozak
★ 1.4k • written 12.7 years ago by
Dan D
7.4k
3
votes
2
replies
5.5k
views
Picard Bait And Target Sequences For Hybrid Selection Metrics
picard
exome
qc
updated 12.7 years ago by
Sean Davis
27k • written 12.7 years ago by
Dan D
7.4k
19 results • Page
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