User: iamjli

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iamjli10
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1 year, 11 months ago
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i*****@mit.edu

Posts by iamjli

<prev • 6 results • page 1 of 1 • next >
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Answer: A: how to retrieve binding affinity matrix in diffbind
... For completeness, this question has been answered [here][1]. [1]: https://support.bioconductor.org/p/118314/ ...
written 3 months ago by iamjli10
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Answer: A: smoothing or binning bigWig file
... A little late, but what about [multiBigWigSummary][1]? I don't see why it wouldn't work with just one input file. [1]: https://deeptools.readthedocs.io/en/2.1.0/content/tools/multiBigwigSummary.html ...
written 5 months ago by iamjli10
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Comment: C: Where to find *full* GO gene annotation file?
... Gotcha, thanks for the info, Istvan. I guess my question is then where can I download the annotations that AmiGO uses? I see they have an option to download filtered searches, but I'm looking for the entire GAF file. ...
written 23 months ago by iamjli10
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Comment: C: Where to find *full* GO gene annotation file?
... Yes, I understand the difference between the two files. Why does GO:0010604 appear in AmiGO and GOrilla, but not in the .gaf file (this is the one I'm referring to: http://geneontology.org/gene-associations/goa_human.gaf.gz) ...
written 23 months ago by iamjli10
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Comment: C: Where to find *full* GO gene annotation file?
... Yes, I'm wondering why AmiGO has it, but not the GAF file. I am referring to this file in particular: http://geneontology.org/gene-associations/goa_human.gaf.gz ...
written 23 months ago by iamjli10
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Where to find *full* GO gene annotation file?
... Hi, I've been struggling with finding a full, unfiltered GO annotation file (GAF). A number of different GO enrichment sites point to here to download the GAF file: http://www.geneontology.org/page/download-annotations But this is apparently not complete. For instance, when I use GOrilla, GO:0010 ...
enrichment gene ontology gaf go written 23 months ago by iamjli10 • updated 23 months ago by Istvan Albert ♦♦ 80k

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