User: user_g

gravatar for user_g
user_g20
Reputation:
20
Status:
New User
Location:
Last seen:
1 year, 4 months ago
Joined:
3 years, 3 months ago
Email:
g***********@lau.edu

Posts by user_g

<prev • 17 results • page 2 of 2 • next >
1
vote
0
answers
860
views
0
answers
Splitting a dataframe into overlapping groups of equal sizes
... Hello, I am looking for a way to split my data into groups where each group is made of the same window size I define. Chrom Start End chr1 1 10 chr1 11 20 chr1 21 30 chr1 31 40 For example, if I want a window ...
R genomicrange grange irange written 2.5 years ago by user_g20
0
votes
1
answer
1.1k
views
1
answer
Detecting Overlaps within Grange Object
... Hello, I have a Grange object which contains coordinates. I am using > findOverlaps() function from the > GenomicRanges Package inorder to detect overlaps. They provide 2 options, either minOverlap or maxGap. But I was trying to find a way to detect, maxOverlap or minGap. Is there a w ...
R genomicranges granges written 2.5 years ago by user_g20 • updated 2.5 years ago by d-cameron2.2k
0
votes
0
answers
720
views
0
answers
Cannot calculate order statistic on object with 3 columns in R
... I have 3 .CEL files which are replicates. Im trying to get the diffrentially expressed genes between them but when I reach this line : "celfiles.filtered <- nsFilter(celfiles.normalise, require.entrez=TRUE, remove.dupEntrez=TRUE)" I get this error: " Error in rowQ(eSet, floor(0.25 * numSamp)) : ...
R microarray statistics written 3.2 years ago by user_g20
0
votes
1
answer
1.3k
views
1
answers
Comment: C: Clustering and Bedtools
... Thank you very much ! ...
written 3.3 years ago by user_g20
0
votes
0
answers
648
views
0
answers
Comment: C: Is there a way to cluster 2 or 3 bed files according to a window size?
... I hope there is a way ...
written 3.3 years ago by user_g20
0
votes
1
answer
1.3k
views
1
answers
Comment: C: Clustering and Bedtools
... Oh Thank you Carlo. Well what I intend to do is to detect clusters made from a combination of TF binding sites in a sequence. So lets say I want to detect a cluster made from 1TF binding Site A, and 2TF binding Site B; I want to search the genome sequence to detect where I can find this cluster of ...
written 3.3 years ago by user_g20
0
votes
1
answer
1.3k
views
1
answer
Clustering and Bedtools
... Hello, I have bedfiles for 2 TFs and I want to use their start and end sites to cluster them within a certain window base pair. I found cluster function in bedtools however I want to consider 2TF1 and 1TF2 as one cluster ( I wan my cluster to be made of 2parts of TF1 and 1part of the second TF); I ...
bedtools bedfile clustering written 3.3 years ago by user_g20 • updated 7 months ago by Biostar ♦♦ 20

Latest awards to user_g

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 895 users visited in the last hour